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  5. Gb_34674

Gb_34674


Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 117.0)


Gene families : OG0000473 (Archaeplastida) Phylogenetic Tree(s): OG0000473_tree ,
OG_05_0000246 (LandPlants) Phylogenetic Tree(s): OG_05_0000246_tree ,
OG_06_0027813 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34674
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00171210 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01017512001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_23451 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 Archaeplastida
Gb_34677 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_37285 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os06g08120.1 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 Archaeplastida
Solyc07g007010.1.1 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:1902495 transmembrane transporter complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
CC GO:1990351 transporter complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 21 479
No external refs found!