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  5. Gb_35190

Gb_35190


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 710.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35190
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AT2G02750 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT2G33760 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01015466001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_02911 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_04079 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
Gb_19924 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.02 Archaeplastida
Gb_32453 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Gb_37254 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_41801 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_140591g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_20746g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_470025g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_472579g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_60579g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_81105g0010 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Smo115259 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
Solyc02g065030.1.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Solyc03g007840.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc03g116000.1.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.03 Archaeplastida
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.03 Archaeplastida
Solyc12g006575.1.1 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
Zm00001e031396_P001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida
Zm00001e041082_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 636 659
IPR002885 Pentatricopeptide_repeat 561 608
IPR002885 Pentatricopeptide_repeat 460 507
IPR002885 Pentatricopeptide_repeat 156 204
IPR002885 Pentatricopeptide_repeat 257 304
IPR002885 Pentatricopeptide_repeat 359 405
IPR032867 DYW_dom 735 858
No external refs found!