AT2G47900 (AtTLP3, TLP3)

Aliases : AtTLP3, TLP3

Description : tubby like protein 3

Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree ,
OG_06_0000341 (SeedPlants) Phylogenetic Tree(s): OG_06_0000341_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G47900
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001049.14	No alias	RNA biosynthesis.transcriptional activation.TUB...	0.01	Archaeplastida
LOC_Os05g36190.1	No alias	transcription factor (TUB)	0.03	Archaeplastida
Smo91333	No alias	RNA biosynthesis.transcriptional activation.TUB...	0.02	Archaeplastida
Zm00001e001672_P001	No alias	transcription factor (TUB)	0.02	Archaeplastida
Zm00001e007472_P001	No alias	transcription factor (TUB)	0.02	Archaeplastida
Zm00001e015581_P001	No alias	transcription factor (TUB)	0.03	Archaeplastida
Zm00001e016851_P001	No alias	transcription factor (TUB)	0.03	Archaeplastida
Zm00001e023326_P001	No alias	transcription factor (TUB)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
MF	GO:0008081	phosphoric diester hydrolase activity	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009536	plastid	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	IMP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009636	response to toxic substance	None	Extended
BP	GO:0009651	response to salt stress	IDA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
BP	GO:0042542	response to hydrogen peroxide	IEP	Interproscan
MF	GO:0042578	phosphoric ester hydrolase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046677	response to antibiotic	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071470	cellular response to osmotic stress	IDA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Neighborhood
CC	GO:0000775	chromosome, centromeric region	IEP	Neighborhood
CC	GO:0000781	chromosome, telomeric region	IEP	Neighborhood
BP	GO:0002237	response to molecule of bacterial origin	IEP	Neighborhood
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Neighborhood
MF	GO:0003879	ATP phosphoribosyltransferase activity	IEP	Neighborhood
MF	GO:0003958	NADPH-hemoprotein reductase activity	IEP	Neighborhood
MF	GO:0004300	enoyl-CoA hydratase activity	IEP	Neighborhood
MF	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	IEP	Neighborhood
MF	GO:0004372	glycine hydroxymethyltransferase activity	IEP	Neighborhood
MF	GO:0004430	1-phosphatidylinositol 4-kinase activity	IEP	Neighborhood
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Neighborhood
MF	GO:0005047	signal recognition particle binding	IEP	Neighborhood
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005457	GDP-fucose transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005459	UDP-galactose transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005460	UDP-glucose transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006491	N-glycan processing	IEP	Neighborhood
BP	GO:0006493	protein O-linked glycosylation	IEP	Neighborhood
BP	GO:0006517	protein deglycosylation	IEP	Neighborhood
BP	GO:0006547	histidine metabolic process	IEP	Neighborhood
BP	GO:0006563	L-serine metabolic process	IEP	Neighborhood
BP	GO:0006567	threonine catabolic process	IEP	Neighborhood
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
MF	GO:0008061	chitin binding	IEP	Neighborhood
MF	GO:0008142	oxysterol binding	IEP	Neighborhood
MF	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity	IEP	Neighborhood
BP	GO:0009100	glycoprotein metabolic process	IEP	Neighborhood
BP	GO:0009266	response to temperature stimulus	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
CC	GO:0009331	glycerol-3-phosphate dehydrogenase complex	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009629	response to gravity	IEP	Neighborhood
BP	GO:0009630	gravitropism	IEP	Neighborhood
BP	GO:0009642	response to light intensity	IEP	Neighborhood
BP	GO:0009644	response to high light intensity	IEP	Neighborhood
BP	GO:0009648	photoperiodism	IEP	Neighborhood
BP	GO:0009704	de-etiolation	IEP	Neighborhood
MF	GO:0009824	AMP dimethylallyltransferase activity	IEP	Neighborhood
BP	GO:0009868	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	IEP	Neighborhood
CC	GO:0009897	external side of plasma membrane	IEP	Neighborhood
BP	GO:0010048	vernalization response	IEP	Neighborhood
BP	GO:0010921	regulation of phosphatase activity	IEP	Neighborhood
BP	GO:0010959	regulation of metal ion transport	IEP	Neighborhood
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015700	arsenite transport	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Neighborhood
BP	GO:0015783	GDP-fucose transmembrane transport	IEP	Neighborhood
BP	GO:0015786	UDP-glucose transmembrane transport	IEP	Neighborhood
BP	GO:0015804	neutral amino acid transport	IEP	Neighborhood
BP	GO:0015824	proline transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016208	AMP binding	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016508	long-chain-enoyl-CoA hydratase activity	IEP	Neighborhood
MF	GO:0016653	oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0019208	phosphatase regulator activity	IEP	Neighborhood
MF	GO:0019212	phosphatase inhibitor activity	IEP	Neighborhood
MF	GO:0019888	protein phosphatase regulator activity	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
MF	GO:0030544	Hsp70 protein binding	IEP	Neighborhood
MF	GO:0031072	heat shock protein binding	IEP	Neighborhood
MF	GO:0032934	sterol binding	IEP	Neighborhood
BP	GO:0033609	oxalate metabolic process	IEP	Neighborhood
BP	GO:0033611	oxalate catabolic process	IEP	Neighborhood
MF	GO:0033925	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	IEP	Neighborhood
MF	GO:0036080	purine nucleotide-sugar transmembrane transporter activity	IEP	Neighborhood
BP	GO:0042127	regulation of cell proliferation	IEP	Neighborhood
BP	GO:0042891	antibiotic transport	IEP	Neighborhood
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Neighborhood
BP	GO:0043132	NAD transport	IEP	Neighborhood
BP	GO:0043270	positive regulation of ion transport	IEP	Neighborhood
BP	GO:0043434	response to peptide hormone	IEP	Neighborhood
BP	GO:0043649	dicarboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046482	para-aminobenzoic acid metabolic process	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Neighborhood
BP	GO:0046834	lipid phosphorylation	IEP	Neighborhood
BP	GO:0046854	phosphatidylinositol phosphorylation	IEP	Neighborhood
BP	GO:0048358	mucilage pectin biosynthetic process	IEP	Neighborhood
BP	GO:0048363	mucilage pectin metabolic process	IEP	Neighborhood
BP	GO:0048438	floral whorl development	IEP	Neighborhood
BP	GO:0048467	gynoecium development	IEP	Neighborhood
BP	GO:0048573	photoperiodism, flowering	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
MF	GO:0050203	oxalate-CoA ligase activity	IEP	Neighborhood
BP	GO:0050826	response to freezing	IEP	Neighborhood
BP	GO:0051050	positive regulation of transport	IEP	Neighborhood
BP	GO:0051181	cofactor transport	IEP	Neighborhood
BP	GO:0051182	coenzyme transport	IEP	Neighborhood
MF	GO:0051184	cofactor transmembrane transporter activity	IEP	Neighborhood
MF	GO:0051185	coenzyme transmembrane transporter activity	IEP	Neighborhood
MF	GO:0051724	NAD transmembrane transporter activity	IEP	Neighborhood
BP	GO:0051924	regulation of calcium ion transport	IEP	Neighborhood
BP	GO:0051928	positive regulation of calcium ion transport	IEP	Neighborhood
MF	GO:0052622	ATP dimethylallyltransferase activity	IEP	Neighborhood
MF	GO:0052623	ADP dimethylallyltransferase activity	IEP	Neighborhood
BP	GO:0052646	alditol phosphate metabolic process	IEP	Neighborhood
MF	GO:0052742	phosphatidylinositol kinase activity	IEP	Neighborhood
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Neighborhood
BP	GO:0060416	response to growth hormone	IEP	Neighborhood
BP	GO:0071216	cellular response to biotic stimulus	IEP	Neighborhood
BP	GO:0071219	cellular response to molecule of bacterial origin	IEP	Neighborhood
BP	GO:0071323	cellular response to chitin	IEP	Neighborhood
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0072334	UDP-galactose transmembrane transport	IEP	Neighborhood
BP	GO:0080148	negative regulation of response to water deprivation	IEP	Neighborhood
BP	GO:0080163	regulation of protein serine/threonine phosphatase activity	IEP	Neighborhood
BP	GO:0080170	hydrogen peroxide transmembrane transport	IEP	Neighborhood
BP	GO:0090480	purine nucleotide-sugar transmembrane transport	IEP	Neighborhood
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Neighborhood
CC	GO:0098552	side of membrane	IEP	Neighborhood
CC	GO:0098687	chromosomal region	IEP	Neighborhood
BP	GO:1901652	response to peptide	IEP	Neighborhood
BP	GO:2000070	regulation of response to water deprivation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000007	Tubby_C	115	401
IPR001810	F-box_dom	51	102

External Links

No external refs found!

AT2G47900 (AtTLP3, TLP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation