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  5. Gb_35268

Gb_35268


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 755.0)


Gene families : OG0007516 (Archaeplastida) Phylogenetic Tree(s): OG0007516_tree ,
OG_05_0028975 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0027392 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35268
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_110266g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.11 Archaeplastida
MA_296059g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_658463g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_7379g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_74986g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Solyc04g039940.3.1 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 591 615
IPR002885 Pentatricopeptide_repeat 224 254
IPR002885 Pentatricopeptide_repeat 163 192
IPR002885 Pentatricopeptide_repeat 131 157
IPR002885 Pentatricopeptide_repeat 194 221
IPR002885 Pentatricopeptide_repeat 255 280
IPR002885 Pentatricopeptide_repeat 359 384
IPR032867 DYW_dom 690 814
IPR002885 Pentatricopeptide_repeat 97 129
IPR002885 Pentatricopeptide_repeat 283 331
IPR002885 Pentatricopeptide_repeat 516 564
IPR002885 Pentatricopeptide_repeat 416 461
No external refs found!