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  5. Gb_35350

Gb_35350


Description : chromatin-associated epigenetic factor


Gene families : OG0000993 (Archaeplastida) Phylogenetic Tree(s): OG0000993_tree ,
OG_05_0000970 (LandPlants) Phylogenetic Tree(s): OG_05_0000970_tree ,
OG_06_0001706 (SeedPlants) Phylogenetic Tree(s): OG_06_0001706_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35350
Cluster HCCA: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00187070 evm_27.TU.AmTr_v1... Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00055p00188210 evm_27.TU.AmTr_v1... Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT5G55390 EDM2 ENHANCED DOWNY MILDEW 2 0.06 Archaeplastida
MA_10437053g0010 No alias Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_124481g0010 No alias Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_9621602g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_9815g0020 No alias Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c17_12870V3.1 No alias ENHANCED DOWNY MILDEW 2 0.05 Archaeplastida
Solyc10g006090.4.1 No alias chromatin-associated epigenetic factor 0.04 Archaeplastida
Solyc10g051140.3.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e017886_P004 No alias Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Zm00001e033682_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e033683_P001 No alias no hits & (original description: none) 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022702 Cytosine_MeTrfase1_RFD 35 158
No external refs found!