AT3G01180 (SS2, AtSS2)

Aliases : SS2, AtSS2

Description : starch synthase 2

Gene families : OG0000161 (Archaeplastida) Phylogenetic Tree(s): OG0000161_tree ,
OG_05_0002981 (LandPlants) Phylogenetic Tree(s): OG_05_0002981_tree ,
OG_06_0003717 (SeedPlants) Phylogenetic Tree(s): OG_06_0003717_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G01180
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
MA_10430152g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp1g23570.1	No alias	Probable starch synthase 4, chloroplastic/amyloplastic...	0.02	Archaeplastida
Mp2g20000.1	No alias	starch synthase (SSIII)	0.02	Archaeplastida
Pp3c18_20850V3.1	No alias	UDP-Glycosyltransferase superfamily protein	0.02	Archaeplastida
Zm00001e027473_P001	No alias	starch synthase (SSIV)	0.06	Archaeplastida
Zm00001e039962_P001	No alias	starch synthase (SSIII)	0.03	Archaeplastida
Zm00001e041682_P002	No alias	starch synthase (SSIII)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006643	membrane lipid metabolic process	None	Extended
BP	GO:0006664	glycolipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
MF	GO:0009011	starch synthase activity	IMP	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009247	glycolipid biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010021	amylopectin biosynthetic process	IMP	Interproscan
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	RCA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	ISS	Interproscan
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0019374	galactolipid metabolic process	None	Extended
BP	GO:0019375	galactolipid biosynthetic process	RCA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019751	polyol metabolic process	None	Extended
BP	GO:0032958	inositol phosphate biosynthetic process	None	Extended
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043647	inositol phosphate metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046173	polyol biosynthetic process	None	Extended
BP	GO:0046467	membrane lipid biosynthetic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1903509	liposaccharide metabolic process	None	Extended
BP	GO:2000896	amylopectin metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	IEP	Neighborhood
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0003913	DNA photolyase activity	IEP	Neighborhood
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
MF	GO:0004645	phosphorylase activity	IEP	Neighborhood
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0004871	obsolete signal transducer activity	IEP	Neighborhood
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005217	intracellular ligand-gated ion channel activity	IEP	Neighborhood
MF	GO:0005261	cation channel activity	IEP	Neighborhood
MF	GO:0005262	calcium channel activity	IEP	Neighborhood
MF	GO:0005451	monovalent cation:proton antiporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005834	heterotrimeric G-protein complex	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0005982	starch metabolic process	IEP	Neighborhood
BP	GO:0005984	disaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006857	oligopeptide transport	IEP	Neighborhood
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
MF	GO:0008066	glutamate receptor activity	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008453	alanine-glyoxylate transaminase activity	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
MF	GO:0008905	mannose-phosphate guanylyltransferase activity	IEP	Neighborhood
MF	GO:0008928	mannose-1-phosphate guanylyltransferase (GDP) activity	IEP	Neighborhood
BP	GO:0009250	glucan biosynthetic process	IEP	Neighborhood
BP	GO:0009311	oligosaccharide metabolic process	IEP	Neighborhood
BP	GO:0010099	regulation of photomorphogenesis	IEP	Neighborhood
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	Neighborhood
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IEP	Neighborhood
MF	GO:0010471	GDP-galactose:mannose-1-phosphate guanylyltransferase activity	IEP	Neighborhood
MF	GO:0010472	GDP-galactose:glucose-1-phosphate guanylyltransferase activity	IEP	Neighborhood
MF	GO:0010473	GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	IEP	Neighborhood
MF	GO:0010474	glucose-1-phosphate guanylyltransferase (GDP) activity	IEP	Neighborhood
MF	GO:0010475	galactose-1-phosphate guanylyltransferase (GDP) activity	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015276	ligand-gated ion channel activity	IEP	Neighborhood
MF	GO:0015299	solute:proton antiporter activity	IEP	Neighborhood
MF	GO:0015386	potassium:proton antiporter activity	IEP	Neighborhood
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015695	organic cation transport	IEP	Neighborhood
BP	GO:0015748	organophosphate ester transport	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
BP	GO:0019252	starch biosynthetic process	IEP	Neighborhood
BP	GO:0019852	L-ascorbic acid metabolic process	IEP	Neighborhood
BP	GO:0019853	L-ascorbic acid biosynthetic process	IEP	Neighborhood
MF	GO:0019992	diacylglycerol binding	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0022821	potassium ion antiporter activity	IEP	Neighborhood
MF	GO:0022834	ligand-gated channel activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030148	sphingolipid biosynthetic process	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
BP	GO:0030974	thiamine pyrophosphate transmembrane transport	IEP	Neighborhood
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
MF	GO:0038023	signaling receptor activity	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0043200	response to amino acid	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044257	cellular protein catabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044434	chloroplast part	IEP	Neighborhood
CC	GO:0044435	plastid part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0045117	azole transport	IEP	Neighborhood
BP	GO:0046519	sphingoid metabolic process	IEP	Neighborhood
BP	GO:0046520	sphingoid biosynthetic process	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	Neighborhood
MF	GO:0047958	glycine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
BP	GO:0051181	cofactor transport	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0052386	cell wall thickening	IEP	Neighborhood
BP	GO:0052482	defense response by cell wall thickening	IEP	Neighborhood
BP	GO:0052543	callose deposition in cell wall	IEP	Neighborhood
BP	GO:0052544	defense response by callose deposition in cell wall	IEP	Neighborhood
BP	GO:0055074	calcium ion homeostasis	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
MF	GO:0061135	endopeptidase regulator activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0071230	cellular response to amino acid stimulus	IEP	Neighborhood
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Neighborhood
BP	GO:0072348	sulfur compound transport	IEP	Neighborhood
BP	GO:0072503	cellular divalent inorganic cation homeostasis	IEP	Neighborhood
BP	GO:0072531	pyrimidine-containing compound transmembrane transport	IEP	Neighborhood
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	Neighborhood
MF	GO:0080046	quercetin 4'-O-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0080048	GDP-D-glucose phosphorylase activity	IEP	Neighborhood
MF	GO:0090422	thiamine pyrophosphate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Neighborhood
BP	GO:0098656	anion transmembrane transport	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
MF	GO:1901474	azole transmembrane transporter activity	IEP	Neighborhood
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901699	cellular response to nitrogen compound	IEP	Neighborhood
CC	GO:1905360	GTPase complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood
BP	GO:2000030	regulation of response to red or far red light	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013534	Starch_synth_cat_dom	302	544
IPR001296	Glyco_trans_1	604	745

External Links

No external refs found!

AT3G01180 (SS2, AtSS2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation