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  5. Gb_35718

Gb_35718


Description : Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana (sp|q9caa8|pp108_arath : 239.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35718
Cluster HCCA: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01021403001 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.02 Archaeplastida
Gb_01151 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.11 Archaeplastida
MA_68707g0010 No alias RNA editing factor (MEF1) 0.02 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Smo97139 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 220 241
IPR002885 Pentatricopeptide_repeat 145 166
IPR002885 Pentatricopeptide_repeat 282 311
IPR002885 Pentatricopeptide_repeat 174 187
IPR002885 Pentatricopeptide_repeat 47 94
No external refs found!