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  5. Gb_36108

Gb_36108


Description : Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana (sp|p0c897|y3264_arath : 100.0)


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0000062 (SeedPlants) Phylogenetic Tree(s): OG_06_0000062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36108
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00254390 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00016p00254630 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00023p00170960 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT1G67150 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G50150 No alias Plant protein of unknown function (DUF247) 0.02 Archaeplastida
AT3G50160 No alias Plant protein of unknown function (DUF247) 0.05 Archaeplastida
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
GSVIVT01014791001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01014793001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01033794001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_12420 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.01 Archaeplastida
Gb_30248 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g21670.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g38120.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g15500.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os05g10920.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os11g33394.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.01 Archaeplastida
MA_10428282g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_109716g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.01 Archaeplastida
MA_120599g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_314857g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_9718623g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc02g093020.3.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Solyc04g008900.4.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 50 471
No external refs found!