Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana (sp|q9lvq5|pp432_arath : 861.0)
Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Gb_36320 | |
Cluster | HCCA: Cluster_289 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00059p00156460 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.05 | Archaeplastida | |
GSVIVT01008360001 | No alias | Pentatricopeptide repeat-containing protein At5g40400... | 0.04 | Archaeplastida | |
GSVIVT01009638001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
GSVIVT01010244001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
GSVIVT01012774001 | No alias | Pentatricopeptide repeat-containing protein At5g55840... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000726 | non-recombinational repair | IEP | Neighborhood |
MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Neighborhood |
MF | GO:0004677 | DNA-dependent protein kinase activity | IEP | Neighborhood |
CC | GO:0005956 | protein kinase CK2 complex | IEP | Neighborhood |
BP | GO:0006281 | DNA repair | IEP | Neighborhood |
BP | GO:0006302 | double-strand break repair | IEP | Neighborhood |
BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | Neighborhood |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
MF | GO:0019207 | kinase regulator activity | IEP | Neighborhood |
MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
MF | GO:0019887 | protein kinase regulator activity | IEP | Neighborhood |
MF | GO:0030234 | enzyme regulator activity | IEP | Neighborhood |
CC | GO:0031011 | Ino80 complex | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
CC | GO:0033202 | DNA helicase complex | IEP | Neighborhood |
BP | GO:0033554 | cellular response to stress | IEP | Neighborhood |
MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044427 | chromosomal part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044454 | nuclear chromosome part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0051716 | cellular response to stimulus | IEP | Neighborhood |
MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Neighborhood |
BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Neighborhood |
CC | GO:0097346 | INO80-type complex | IEP | Neighborhood |
MF | GO:0098772 | molecular function regulator | IEP | Neighborhood |
MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Neighborhood |
CC | GO:1902494 | catalytic complex | IEP | Neighborhood |
CC | GO:1904949 | ATPase complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 593 | 623 |
IPR002885 | Pentatricopeptide_repeat | 983 | 1008 |
IPR002885 | Pentatricopeptide_repeat | 625 | 673 |
IPR002885 | Pentatricopeptide_repeat | 801 | 848 |
IPR002885 | Pentatricopeptide_repeat | 209 | 252 |
IPR002885 | Pentatricopeptide_repeat | 905 | 954 |
IPR002885 | Pentatricopeptide_repeat | 1080 | 1129 |
IPR002885 | Pentatricopeptide_repeat | 520 | 569 |
IPR002885 | Pentatricopeptide_repeat | 730 | 779 |
IPR002885 | Pentatricopeptide_repeat | 380 | 429 |
IPR002885 | Pentatricopeptide_repeat | 310 | 359 |
IPR002885 | Pentatricopeptide_repeat | 273 | 304 |
IPR002885 | Pentatricopeptide_repeat | 866 | 898 |
IPR002885 | Pentatricopeptide_repeat | 692 | 724 |
IPR002885 | Pentatricopeptide_repeat | 448 | 477 |
IPR002885 | Pentatricopeptide_repeat | 1041 | 1071 |
IPR002885 | Pentatricopeptide_repeat | 482 | 513 |
No external refs found! |