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Description : mRNA decay factor (PAT1)
Gene families : OG0002447 (Archaeplastida) Phylogenetic Tree(s): OG0002447_tree ,
OG_05_0002022 (LandPlants) Phylogenetic Tree(s): OG_05_0002022_tree ,
OG_06_0001683 (SeedPlants) Phylogenetic Tree(s): OG_06_0001683_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_36345 | |
| Cluster | HCCA: Cluster_102 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00155p00028780 | evm_27.TU.AmTr_v1... | Protein PAT1 homolog OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| MA_10376188g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| MA_10426858g0010 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Mp4g14040.1 | No alias | mRNA decay factor (PAT1) | 0.02 | Archaeplastida | |
| Solyc05g016240.4.1 | No alias | mRNA decay factor (PAT1) | 0.03 | Archaeplastida | |
| Zm00001e019701_P001 | No alias | mRNA decay factor (PAT1) | 0.02 | Archaeplastida | |
| Zm00001e032105_P001 | No alias | mRNA decay factor (PAT1) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Neighborhood |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0004556 | alpha-amylase activity | IEP | Neighborhood |
| MF | GO:0004888 | transmembrane signaling receptor activity | IEP | Neighborhood |
| MF | GO:0004970 | ionotropic glutamate receptor activity | IEP | Neighborhood |
| MF | GO:0005216 | ion channel activity | IEP | Neighborhood |
| MF | GO:0005230 | extracellular ligand-gated ion channel activity | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006473 | protein acetylation | IEP | Neighborhood |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
| MF | GO:0008066 | glutamate receptor activity | IEP | Neighborhood |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| MF | GO:0015276 | ligand-gated ion channel activity | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016160 | amylase activity | IEP | Neighborhood |
| MF | GO:0016407 | acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0016410 | N-acyltransferase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016573 | histone acetylation | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Neighborhood |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Neighborhood |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Neighborhood |
| MF | GO:0022824 | transmitter-gated ion channel activity | IEP | Neighborhood |
| MF | GO:0022834 | ligand-gated channel activity | IEP | Neighborhood |
| MF | GO:0022835 | transmitter-gated channel activity | IEP | Neighborhood |
| MF | GO:0022836 | gated channel activity | IEP | Neighborhood |
| MF | GO:0022838 | substrate-specific channel activity | IEP | Neighborhood |
| MF | GO:0022839 | ion gated channel activity | IEP | Neighborhood |
| MF | GO:0030594 | neurotransmitter receptor activity | IEP | Neighborhood |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0034450 | ubiquitin-ubiquitin ligase activity | IEP | Neighborhood |
| MF | GO:0038023 | signaling receptor activity | IEP | Neighborhood |
| BP | GO:0043543 | protein acylation | IEP | Neighborhood |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Neighborhood |
| MF | GO:0060089 | molecular transducer activity | IEP | Neighborhood |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Neighborhood |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Neighborhood |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |