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  5. AT3G01680

AT3G01680


Description : CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0003880 (Archaeplastida) Phylogenetic Tree(s): OG0003880_tree ,
OG_05_0002690 (LandPlants) Phylogenetic Tree(s): OG_05_0002690_tree ,
OG_06_0001542 (SeedPlants) Phylogenetic Tree(s): OG_06_0001542_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G01680
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00166p00027900 evm_27.TU.AmTr_v1... Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana 0.01 Archaeplastida
AMTR_s00166p00029650 evm_27.TU.AmTr_v1... Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01000576001 No alias Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana 0.11 Archaeplastida
GSVIVT01000577001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.2 Archaeplastida
GSVIVT01000578001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.16 Archaeplastida
GSVIVT01007594001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01032348001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.18 Archaeplastida
GSVIVT01032352001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01032353001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01032357001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.18 Archaeplastida
GSVIVT01032359001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.16 Archaeplastida
GSVIVT01032360001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.21 Archaeplastida
Gb_39915 No alias Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis... 0.03 Archaeplastida
Solyc03g111810.2.1 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis... 0.17 Archaeplastida
Solyc04g026020.3.1 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis... 0.05 Archaeplastida
Solyc05g013850.2.1 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis... 0.1 Archaeplastida
Solyc05g013860.4.1 No alias No annotation 0.07 Archaeplastida
Solyc05g013870.4.1 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0043621 protein self-association IPI Interproscan
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Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004630 phospholipase D activity IEP Neighborhood
MF GO:0004816 asparagine-tRNA ligase activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005986 sucrose biosynthetic process IEP Neighborhood
BP GO:0006421 asparaginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006521 regulation of cellular amino acid metabolic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
CC GO:0009505 plant-type cell wall IEP Neighborhood
BP GO:0009820 alkaloid metabolic process IEP Neighborhood
BP GO:0009821 alkaloid biosynthetic process IEP Neighborhood
BP GO:0010065 primary meristem tissue development IEP Neighborhood
BP GO:0010067 procambium histogenesis IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
CC GO:0016324 apical plasma membrane IEP Neighborhood
MF GO:0016688 L-ascorbate peroxidase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
BP GO:0017157 regulation of exocytosis IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019374 galactolipid metabolic process IEP Neighborhood
BP GO:0019375 galactolipid biosynthetic process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032352 positive regulation of hormone metabolic process IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032890 regulation of organic acid transport IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033037 polysaccharide localization IEP Neighborhood
BP GO:0033238 regulation of cellular amine metabolic process IEP Neighborhood
BP GO:0033240 positive regulation of cellular amine metabolic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036293 response to decreased oxygen levels IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0045764 positive regulation of cellular amino acid metabolic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0046466 membrane lipid catabolic process IEP Neighborhood
BP GO:0048508 embryonic meristem development IEP Neighborhood
BP GO:0051046 regulation of secretion IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051648 vesicle localization IEP Neighborhood
BP GO:0051650 establishment of vesicle localization IEP Neighborhood
BP GO:0051952 regulation of amine transport IEP Neighborhood
BP GO:0051955 regulation of amino acid transport IEP Neighborhood
BP GO:0052545 callose localization IEP Neighborhood
BP GO:0060627 regulation of vesicle-mediated transport IEP Neighborhood
BP GO:0062013 positive regulation of small molecule metabolic process IEP Neighborhood
BP GO:0070482 response to oxygen levels IEP Neighborhood
BP GO:0080143 regulation of amino acid export IEP Neighborhood
BP GO:0080165 callose deposition in phloem sieve plate IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
BP GO:0090355 positive regulation of auxin metabolic process IEP Neighborhood
BP GO:0090357 regulation of tryptophan metabolic process IEP Neighborhood
BP GO:0090358 positive regulation of tryptophan metabolic process IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1903530 regulation of secretion by cell IEP Neighborhood
BP GO:1903789 regulation of amino acid transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR027942 SEO_N 38 320
IPR027944 SEO_C 491 728
No external refs found!