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  5. Gb_36433

Gb_36433


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 538.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36433

Target Alias Description ECC score Gene Family Method Actions
Gb_03691 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.09 Archaeplastida
Gb_04886 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.17 Archaeplastida
Gb_05939 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_06576 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_07290 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.09 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_08518 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_08772 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
Gb_09702 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_10908 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_11389 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_11664 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_13405 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_16848 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_16955 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_19828 No alias RNA editing factor (OTP82) 0.08 Archaeplastida
Gb_22477 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
Gb_23023 No alias RNA editing factor (OTP82) 0.08 Archaeplastida
Gb_23605 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_24030 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_24755 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_25604 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
Gb_26158 No alias RNA editing factor (OTP82) 0.08 Archaeplastida
Gb_27176 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_27437 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_28612 No alias RNA editing factor (MEF11) 0.03 Archaeplastida
Gb_28764 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Gb_30097 No alias RNA editing factor (CRR21) 0.05 Archaeplastida
Gb_32051 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_32528 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
Gb_33070 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Gb_33828 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_36172 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Gb_36177 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_37396 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_40040 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 608 634
IPR002885 Pentatricopeptide_repeat 540 563
IPR002885 Pentatricopeptide_repeat 299 326
IPR002885 Pentatricopeptide_repeat 439 463
IPR002885 Pentatricopeptide_repeat 328 353
IPR032867 DYW_dom 638 691
IPR002885 Pentatricopeptide_repeat 223 271
IPR002885 Pentatricopeptide_repeat 122 170
IPR002885 Pentatricopeptide_repeat 465 512
IPR002885 Pentatricopeptide_repeat 359 403
No external refs found!