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  5. Gb_36538

Gb_36538


Description : Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana (sp|q7y211|pp285_arath : 701.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36538
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00029450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 Archaeplastida
Gb_00601 No alias RNA editing factor (OTP82) 0.08 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_02194 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_04419 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_04450 No alias OTP70 plastidial RNA splicing factor 0.04 Archaeplastida
Gb_05264 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_07723 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_08053 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
Gb_08619 No alias RNA editing factor (MEF19) 0.06 Archaeplastida
Gb_08745 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_13405 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_16101 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Gb_17294 No alias RNA editing factor (MEF3) 0.04 Archaeplastida
Gb_17382 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_18979 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_19693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_20547 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_21049 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_21270 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_21555 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_22613 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_26501 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_29872 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.07 Archaeplastida
Gb_30097 No alias RNA editing factor (CRR21) 0.05 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_32439 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
Gb_32450 No alias RNA editing factor (CRR21) 0.05 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_34299 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_37254 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_38242 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_39560 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_40749 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_41801 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.04 Archaeplastida
MA_101084g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_102449g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_112594g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_124907g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.07 Archaeplastida
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_183278g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_285386g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_43497g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.03 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_81436g0010 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
MA_835083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Smo11658 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Smo126928 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo136851 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo334 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Smo51647 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.02 Archaeplastida
Smo61257 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
Smo79648 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo82268 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Smo86405 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo99993 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Solyc02g070710.3.1 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.03 Archaeplastida
Solyc11g017370.3.1 No alias RNA editing factor (AEF1) 0.03 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e005067_P001 No alias Pentatricopeptide repeat-containing protein At2g42920,... 0.03 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e007538_P001 No alias RNA editing factor (MEF21) 0.03 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e011417_P001 No alias RNA editing factor (CRR28) 0.05 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
Zm00001e019452_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e021453_P001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.04 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e035654_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 396 418
IPR002885 Pentatricopeptide_repeat 699 722
IPR032867 DYW_dom 797 921
IPR002885 Pentatricopeptide_repeat 623 671
IPR002885 Pentatricopeptide_repeat 118 166
IPR002885 Pentatricopeptide_repeat 522 570
IPR002885 Pentatricopeptide_repeat 220 267
IPR002885 Pentatricopeptide_repeat 422 467
IPR002885 Pentatricopeptide_repeat 320 367
No external refs found!