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  5. Gb_36884

Gb_36884


Description : Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana (sp|q9m907|pp217_arath : 1167.0)


Gene families : OG0008888 (Archaeplastida) Phylogenetic Tree(s): OG0008888_tree ,
OG_05_0008600 (LandPlants) Phylogenetic Tree(s): OG_05_0008600_tree ,
OG_06_0007808 (SeedPlants) Phylogenetic Tree(s): OG_06_0007808_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36884
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00208290 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g06920... 0.04 Archaeplastida
AT3G06920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
GSVIVT01017733001 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.03 Archaeplastida
LOC_Os07g14530.3 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.03 Archaeplastida
MA_60924g0010 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
Pp3c3_19780V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Zm00001e033217_P004 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 322 370
IPR002885 Pentatricopeptide_repeat 845 893
IPR002885 Pentatricopeptide_repeat 671 719
IPR002885 Pentatricopeptide_repeat 495 543
IPR002885 Pentatricopeptide_repeat 600 649
IPR002885 Pentatricopeptide_repeat 426 474
IPR002885 Pentatricopeptide_repeat 775 824
IPR002885 Pentatricopeptide_repeat 568 598
IPR002885 Pentatricopeptide_repeat 291 317
IPR002885 Pentatricopeptide_repeat 255 283
IPR002885 Pentatricopeptide_repeat 395 424
IPR002885 Pentatricopeptide_repeat 736 768
No external refs found!