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  5. AT3G02290

AT3G02290


Description : RING/U-box superfamily protein


Gene families : OG0000951 (Archaeplastida) Phylogenetic Tree(s): OG0000951_tree ,
OG_05_0000709 (LandPlants) Phylogenetic Tree(s): OG_05_0000709_tree ,
OG_06_0000552 (SeedPlants) Phylogenetic Tree(s): OG_06_0000552_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G02290
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00207050 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Solyc01g094840.3.1 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.03 Archaeplastida
Solyc02g089240.3.1 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.03 Archaeplastida
Solyc08g081300.4.1 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000164 protein phosphatase type 1 complex IEP Neighborhood
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Neighborhood
BP GO:0000578 embryonic axis specification IEP Neighborhood
CC GO:0000813 ESCRT I complex IEP Neighborhood
BP GO:0001763 morphogenesis of a branching structure IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003691 double-stranded telomeric DNA binding IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004930 G-protein coupled receptor activity IEP Neighborhood
MF GO:0005344 oxygen carrier activity IEP Neighborhood
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0005347 ATP transmembrane transporter activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006983 ER overload response IEP Neighborhood
BP GO:0006984 ER-nucleus signaling pathway IEP Neighborhood
MF GO:0008020 G-protein coupled photoreceptor activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009301 snRNA transcription IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009798 axis specification IEP Neighborhood
MF GO:0009881 photoreceptor activity IEP Neighborhood
MF GO:0009883 red or far-red light photoreceptor activity IEP Neighborhood
BP GO:0009942 longitudinal axis specification IEP Neighborhood
BP GO:0009945 radial axis specification IEP Neighborhood
CC GO:0010008 endosome membrane IEP Neighborhood
BP GO:0010223 secondary shoot formation IEP Neighborhood
BP GO:0010286 heat acclimation IEP Neighborhood
BP GO:0010346 shoot axis formation IEP Neighborhood
MF GO:0015215 nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015217 ADP transmembrane transporter activity IEP Neighborhood
BP GO:0015669 gas transport IEP Neighborhood
BP GO:0015671 oxygen transport IEP Neighborhood
BP GO:0015865 purine nucleotide transport IEP Neighborhood
BP GO:0015866 ADP transport IEP Neighborhood
BP GO:0015867 ATP transport IEP Neighborhood
BP GO:0015868 purine ribonucleotide transport IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
BP GO:0016073 snRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016578 histone deubiquitination IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043696 dedifferentiation IEP Neighborhood
BP GO:0043697 cell dedifferentiation IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0051503 adenine nucleotide transport IEP Neighborhood
BP GO:0060184 cell cycle switching IEP Neighborhood
BP GO:0071216 cellular response to biotic stimulus IEP Neighborhood
BP GO:0071365 cellular response to auxin stimulus IEP Neighborhood
BP GO:0071368 cellular response to cytokinin stimulus IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0080024 indolebutyric acid metabolic process IEP Neighborhood
BP GO:0080129 proteasome core complex assembly IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
BP GO:0098781 ncRNA transcription IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR024766 Znf_RING_H2 178 221
No external refs found!