AT3G02650


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0010551 (Archaeplastida) Phylogenetic Tree(s): OG0010551_tree ,
OG_05_0010551 (LandPlants) Phylogenetic Tree(s): OG_05_0010551_tree ,
OG_06_0010207 (SeedPlants) Phylogenetic Tree(s): OG_06_0010207_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G02650
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g67210.1 No alias Pentatricopeptide repeat-containing protein At3g02650,... 0.04 Archaeplastida
Solyc11g005140.1.1 No alias Pentatricopeptide repeat-containing protein At3g02650,... 0.1 Archaeplastida
Zm00001e018963_P001 No alias Pentatricopeptide repeat-containing protein At3g02650,... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0004071 aspartate-ammonia ligase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005677 chromatin silencing complex IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006446 regulation of translational initiation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006528 asparagine metabolic process IEP Neighborhood
BP GO:0006529 asparagine biosynthetic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0007292 female gamete generation IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009749 response to glucose IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010078 maintenance of root meristem identity IEP Neighborhood
BP GO:0010252 auxin homeostasis IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0031056 regulation of histone modification IEP Neighborhood
BP GO:0031058 positive regulation of histone modification IEP Neighborhood
BP GO:0031060 regulation of histone methylation IEP Neighborhood
BP GO:0031062 positive regulation of histone methylation IEP Neighborhood
BP GO:0031401 positive regulation of protein modification process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0047484 regulation of response to osmotic stress IEP Neighborhood
BP GO:0048232 male gamete generation IEP Neighborhood
BP GO:0048572 short-day photoperiodism IEP Neighborhood
BP GO:0048575 short-day photoperiodism, flowering IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051569 regulation of histone H3-K4 methylation IEP Neighborhood
BP GO:0051571 positive regulation of histone H3-K4 methylation IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0061085 regulation of histone H3-K27 methylation IEP Neighborhood
BP GO:0061087 positive regulation of histone H3-K27 methylation IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Neighborhood
CC GO:0090568 nuclear transcriptional repressor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902275 regulation of chromatin organization IEP Neighborhood
BP GO:1905269 positive regulation of chromatin organization IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 478 523
IPR002885 Pentatricopeptide_repeat 407 454
IPR002885 Pentatricopeptide_repeat 273 297
IPR002885 Pentatricopeptide_repeat 307 326
IPR002885 Pentatricopeptide_repeat 377 402
IPR002885 Pentatricopeptide_repeat 237 262
No external refs found!