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  5. Gb_37638

Gb_37638


Description : CFM2-type plastidial RNA splicing factor. CFM3-type plastidial RNA splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0001068 (SeedPlants) Phylogenetic Tree(s): OG_06_0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_37638
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.09 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.08 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.06 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.08 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.05 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Archaeplastida
Cre14.g630301 No alias No description available 0.03 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.08 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
GSVIVT01031001001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
LOC_Os08g27150.1 No alias CRS1 plastidial RNA splicing factor 0.04 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
LOC_Os11g37990.1 No alias CFM3-type plastidial RNA splicing factor 0.06 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.1 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.06 Archaeplastida
MA_130902g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.04 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.1 Archaeplastida
Pp3c12_15870V3.1 No alias CRM family member 2 0.03 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.1 Archaeplastida
Pp3c7_23880V3.1 No alias CRM family member 2 0.02 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Smo20706 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Smo412905 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.08 Archaeplastida
Zm00001e011272_P001 No alias CFM3-type plastidial RNA splicing factor 0.05 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
Zm00001e041033_P001 No alias CFM2-type plastidial RNA splicing factor 0.09 Archaeplastida
Zm00001e041034_P001 No alias CFM2-type plastidial RNA splicing factor 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004655 porphobilinogen synthase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004820 glycine-tRNA ligase activity IEP Neighborhood
MF GO:0004832 valine-tRNA ligase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006426 glycyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006438 valyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035596 methylthiotransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 539 623
IPR001890 RNA-binding_CRM 754 840
IPR001890 RNA-binding_CRM 313 395
No external refs found!