Gb_38136

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 164.0)

Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_38136
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
Gb_03442	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_05523	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_08105	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.11	Archaeplastida
Gb_08402	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_15074	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_18335	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.1	Archaeplastida
Gb_26975	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_30261	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_30314	No alias	no hits & (original description: none)	0.08	Archaeplastida
Gb_30317	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	Archaeplastida
Gb_34975	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_36579	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_40566	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_41335	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	60	110
IPR001584	Integrase_cat-core	123	239

External Links

No external refs found!