Gb_38249

Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 617.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree ,
OG_06_0000024 (SeedPlants) Phylogenetic Tree(s): OG_06_0000024_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_38249
Cluster	HCCA: Cluster_231

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00225420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
AMTR_s00039p00023570	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.02	Archaeplastida
AMTR_s00049p00210350	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00049p00223290	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
AMTR_s00099p00036710	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g71490...	0.02	Archaeplastida
AMTR_s00147p00097570	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g03880,...	0.04	Archaeplastida
AT2G41080	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
Cpa\|evm.model.tig00021312.67	No alias	No description available	0.01	Archaeplastida
GSVIVT01000244001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01004939001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01007937001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
GSVIVT01009866001	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.03	Archaeplastida
GSVIVT01010125001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01011501001	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.04	Archaeplastida
GSVIVT01011735001	No alias	Pentatricopeptide repeat-containing protein At2g01510,...	0.03	Archaeplastida
GSVIVT01018098001	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
GSVIVT01021023001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01021246001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
GSVIVT01021756001	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.03	Archaeplastida
GSVIVT01022230001	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
GSVIVT01024493001	No alias	Pentatricopeptide repeat-containing protein At4g39952,...	0.03	Archaeplastida
GSVIVT01025639001	No alias	Pentatricopeptide repeat-containing protein At3g53360,...	0.06	Archaeplastida
GSVIVT01027196001	No alias	Pentatricopeptide repeat-containing protein At5g08510...	0.03	Archaeplastida
GSVIVT01027839001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01029347001	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
GSVIVT01029382001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01030248001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01032994001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01033304001	No alias	Pentatricopeptide repeat-containing protein At2g02980,...	0.04	Archaeplastida
GSVIVT01033837001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01036943001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.03	Archaeplastida
GSVIVT01037332001	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.03	Archaeplastida
GSVIVT01037562001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
Gb_04828	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.07	Archaeplastida
Gb_06899	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_07290	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Gb_18986	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_36636	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_37802	No alias	Pentatricopeptide repeat-containing protein At2g33680...	0.05	Archaeplastida
Gb_38292	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Gb_38441	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
Gb_39300	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_39560	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.06	Archaeplastida
LOC_Os01g41650.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
LOC_Os01g46230.1	No alias	RNA editing factor (MEF1)	0.02	Archaeplastida
LOC_Os06g40860.1	No alias	Pentatricopeptide repeat-containing protein At1g03540...	0.03	Archaeplastida
LOC_Os08g04400.1	No alias	Pentatricopeptide repeat-containing protein At5g50390,...	0.03	Archaeplastida
MA_101084g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_102449g0020	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
MA_10277392g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_10428121g0010	No alias	Pentatricopeptide repeat-containing protein At4g37170...	0.06	Archaeplastida
MA_10429069g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_10429371g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_10429540g0010	No alias	Pentatricopeptide repeat-containing protein At4g14850...	0.05	Archaeplastida
MA_10432670g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
MA_10436764g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_110g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_112849g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
MA_114565g0020	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
MA_117650g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_11765g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_122899g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_13057g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.08	Archaeplastida
MA_131437g0010	No alias	RNA editing factor (MEF3)	0.03	Archaeplastida
MA_136188g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_140591g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_16226g0010	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.05	Archaeplastida
MA_16917g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
MA_185098g0010	No alias	Pentatricopeptide repeat-containing protein At3g49170,...	0.06	Archaeplastida
MA_20899g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
MA_230261g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
MA_25515g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_27726g0010	No alias	RNA editing factor (ECB2/VAC1)	0.04	Archaeplastida
MA_28390g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.06	Archaeplastida
MA_285318g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_30632g0020	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
MA_322292g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.05	Archaeplastida
MA_32723g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
MA_33151g0010	No alias	Pentatricopeptide repeat-containing protein At1g18485...	0.06	Archaeplastida
MA_3317g0020	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_33533g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_3502g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_41676g0020	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.03	Archaeplastida
MA_43615g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_442926g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.08	Archaeplastida
MA_472579g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_49629g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_501007g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_511569g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_519985g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
MA_56322g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
MA_61422g0020	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_656915g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_66417g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
MA_70677g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_724726g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_75133g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_77437g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_86628g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_8868720g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.06	Archaeplastida
MA_89214g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_921g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.06	Archaeplastida
MA_953240g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.06	Archaeplastida
MA_961981g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
MA_96662g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.08	Archaeplastida
MA_99220g0010	No alias	Pentatricopeptide repeat-containing protein At5g55740,...	0.04	Archaeplastida
Smo102968	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
Smo26786	No alias	Pentatricopeptide repeat-containing protein ELI1,...	0.04	Archaeplastida
Smo77659	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Zm00001e002552_P001	No alias	RNA editing factor (SEL1/PDM1)	0.02	Archaeplastida
Zm00001e028503_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e029119_P001	No alias	Pentatricopeptide repeat-containing protein At2g33760...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	241	266
IPR002885	Pentatricopeptide_repeat	342	367
IPR002885	Pentatricopeptide_repeat	543	567
IPR002885	Pentatricopeptide_repeat	368	415
IPR002885	Pentatricopeptide_repeat	166	213
IPR002885	Pentatricopeptide_repeat	468	517
IPR002885	Pentatricopeptide_repeat	267	314
IPR032867	DYW_dom	642	766

External Links

No external refs found!

Gb_38249

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation