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  5. Gb_38292

Gb_38292


Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 693.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38292
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.04 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
AMTR_s00122p00115170 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AMTR_s00147p00097570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_00601 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_00683 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_02038 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_02808 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.11 Archaeplastida
Gb_03693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_04144 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 Archaeplastida
Gb_04648 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_05264 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_06115 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_06568 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
Gb_07290 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_08862 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.08 Archaeplastida
Gb_08863 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_09409 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.07 Archaeplastida
Gb_09410 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 Archaeplastida
Gb_12551 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_13303 No alias RNA editing factor (MEF19) 0.07 Archaeplastida
Gb_13599 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_14392 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.11 Archaeplastida
Gb_14403 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_15639 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_17321 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_18979 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Gb_20153 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_20503 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_20547 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_20837 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_21441 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_21442 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
Gb_21714 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_22477 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.09 Archaeplastida
Gb_22613 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.08 Archaeplastida
Gb_23023 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_24674 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_24816 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_25046 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_25581 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Gb_25737 No alias RNA editing factor (MEF1) 0.07 Archaeplastida
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.08 Archaeplastida
Gb_26723 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_27468 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_28087 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_28764 No alias RNA editing factor (MEF1) 0.05 Archaeplastida
Gb_29557 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_29874 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_29990 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_30097 No alias RNA editing factor (CRR21) 0.04 Archaeplastida
Gb_30146 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_30147 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_31706 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_32989 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.04 Archaeplastida
Gb_33111 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 Archaeplastida
Gb_33136 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_33719 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_35636 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_36085 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_36434 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_36614 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_38248 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_38249 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_39440 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
Gb_39560 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_39725 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_40432 No alias RNA editing factor (MEF19) 0.09 Archaeplastida
Gb_40749 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
Gb_41234 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_41804 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
LOC_Os01g46230.1 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
LOC_Os04g41120.1 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.05 Archaeplastida
LOC_Os10g30760.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
LOC_Os10g40920.1 No alias RNA editing factor (MEF13) 0.03 Archaeplastida
LOC_Os12g01850.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_110g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_117650g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_24849g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_27726g0010 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
MA_2991g0010 No alias RNA editing factor (MEF12) 0.02 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_442926g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_99220g0010 No alias Pentatricopeptide repeat-containing protein At5g55740,... 0.06 Archaeplastida
Smo101455 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Smo102968 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Smo123450 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo26786 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.06 Archaeplastida
Smo420323 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.02 Archaeplastida
Solyc01g081560.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Zm00001e006544_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e041694_P001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 478 525
IPR002885 Pentatricopeptide_repeat 74 121
IPR002885 Pentatricopeptide_repeat 376 423
IPR002885 Pentatricopeptide_repeat 276 323
IPR002885 Pentatricopeptide_repeat 175 222
IPR002885 Pentatricopeptide_repeat 578 625
IPR002885 Pentatricopeptide_repeat 719 748
IPR002885 Pentatricopeptide_repeat 150 174
IPR002885 Pentatricopeptide_repeat 452 474
IPR002885 Pentatricopeptide_repeat 653 677
IPR032867 DYW_dom 752 876
No external refs found!