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  5. Gb_38297

Gb_38297


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 683.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38297
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00268260 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_00199 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.08 Archaeplastida
Gb_00204 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_00683 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
Gb_02808 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.06 Archaeplastida
Gb_03136 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_03354 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_03571 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_04419 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_04420 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_04533 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_05123 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_05354 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_06115 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_06560 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_06568 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.07 Archaeplastida
Gb_09410 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_09797 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_10157 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_11040 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_13221 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_13405 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_14392 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_15129 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_17321 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
Gb_18979 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_19299 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_20153 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_20503 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_20547 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_21270 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_21441 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.1 Archaeplastida
Gb_21442 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
Gb_21714 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_22288 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_22740 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.06 Archaeplastida
Gb_23089 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_23126 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_23671 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_24126 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_24515 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_24816 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_25046 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_26695 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_26861 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_28037 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.07 Archaeplastida
Gb_29543 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_29874 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_30004 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_30097 No alias RNA editing factor (CRR21) 0.05 Archaeplastida
Gb_32448 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_32989 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.05 Archaeplastida
Gb_35407 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_36398 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_36434 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_37554 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_38232 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_38417 No alias OTP70 plastidial RNA splicing factor 0.04 Archaeplastida
Gb_39514 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_40040 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.07 Archaeplastida
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.1 Archaeplastida
Gb_40432 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
Gb_41325 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_10429540g0010 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.04 Archaeplastida
MA_10429540g0020 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.04 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_177230g0010 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_24849g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_25729g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
MA_28390g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_285318g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_3502g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.06 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_68707g0010 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
MA_83662g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_86739g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_921g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_958908g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
Solyc01g099000.1.1 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.03 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
Zm00001e031396_P001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 523 572
IPR002885 Pentatricopeptide_repeat 43 103
IPR002885 Pentatricopeptide_repeat 700 724
IPR002885 Pentatricopeptide_repeat 500 521
IPR002885 Pentatricopeptide_repeat 196 221
IPR002885 Pentatricopeptide_repeat 600 621
IPR002885 Pentatricopeptide_repeat 121 166
IPR002885 Pentatricopeptide_repeat 222 269
IPR002885 Pentatricopeptide_repeat 323 370
IPR002885 Pentatricopeptide_repeat 423 470
IPR002885 Pentatricopeptide_repeat 626 672
IPR032867 DYW_dom 799 923
No external refs found!