Gb_38369

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 488.0)

Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0007435 (LandPlants) Phylogenetic Tree(s): OG_05_0007435_tree ,
OG_06_0011029 (SeedPlants) Phylogenetic Tree(s): OG_06_0011029_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_38369
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
Cre03.g183950	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_03181	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.09	Archaeplastida
Gb_04745	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.02	Archaeplastida
Gb_05895	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.03	Archaeplastida
Gb_05914	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.13	Archaeplastida
Gb_08011	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.02	Archaeplastida
Gb_10172	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.16	Archaeplastida
Gb_13694	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_18985	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.12	Archaeplastida
Gb_19106	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_21340	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_23035	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.1	Archaeplastida
Gb_25298	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_30542	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.1	Archaeplastida
Gb_31472	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_32087	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.04	Archaeplastida
Gb_37914	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.04	Archaeplastida
Pp3c15_880V3.1	No alias	DNA/RNA polymerases superfamily protein	0.02	Archaeplastida
Pp3c3_31930V3.1	No alias	No annotation	0.02	Archaeplastida
Solyc06g150112.1.1	No alias	No annotation	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	42	151
IPR013103	RVT_2	448	679

External Links

No external refs found!

Gb_38369

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation