Gb_38490

Description : Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana (sp|q9zt94|polr2_arath : 335.0)

Gene families : OG0000390 (Archaeplastida) Phylogenetic Tree(s): OG0000390_tree ,
OG_05_0000129 (LandPlants) Phylogenetic Tree(s): OG_05_0000129_tree ,
OG_06_0000040 (SeedPlants) Phylogenetic Tree(s): OG_06_0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_38490
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
Gb_02142	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.04	Archaeplastida
Gb_04911	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.13	Archaeplastida
Gb_04925	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_07934	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_16945	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.15	Archaeplastida
Gb_17559	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_18114	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.21	Archaeplastida
Gb_19756	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.18	Archaeplastida
Gb_20537	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.08	Archaeplastida
Gb_21087	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_21218	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.21	Archaeplastida
Gb_23276	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_26530	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.24	Archaeplastida
Gb_28461	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.04	Archaeplastida
Gb_30626	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.04	Archaeplastida
Gb_31534	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.04	Archaeplastida
Gb_31767	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.11	Archaeplastida
Gb_36049	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.11	Archaeplastida
Gb_36670	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.15	Archaeplastida
Gb_38275	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.04	Archaeplastida
Gb_40169	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.15	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	32	145

External Links

No external refs found!

Gb_38490

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation