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  5. AT1G11900

AT1G11900


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0011438 (Archaeplastida) Phylogenetic Tree(s): OG0011438_tree ,
OG_05_0011302 (LandPlants) Phylogenetic Tree(s): OG_05_0011302_tree ,
OG_06_0011220 (SeedPlants) Phylogenetic Tree(s): OG_06_0011220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G11900
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
LOC_Os05g40320.1 No alias Pentatricopeptide repeat-containing protein At1g11900... 0.04 Archaeplastida
Solyc07g054680.3.1 No alias Pentatricopeptide repeat-containing protein At1g11900... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0017022 myosin binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
MF GO:0030742 GTP-dependent protein binding IEP Neighborhood
MF GO:0032029 myosin tail binding IEP Neighborhood
MF GO:0032036 myosin heavy chain binding IEP Neighborhood
CC GO:0032588 trans-Golgi network membrane IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
MF GO:0080115 myosin XI tail binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 178 221
IPR002885 Pentatricopeptide_repeat 247 293
IPR002885 Pentatricopeptide_repeat 320 340
IPR002885 Pentatricopeptide_repeat 73 101
No external refs found!