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  5. Gb_38824

Gb_38824


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 764.0)


Gene families : OG0002360 (Archaeplastida) Phylogenetic Tree(s): OG0002360_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38824
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AT2G15690 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_13717 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_15797 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10431508g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_12023g0010 No alias RNA editing factor (MEF9) 0.05 Archaeplastida
MA_136498g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_141118g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_14659g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_376862g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_68580g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_858608g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 644 768
IPR002885 Pentatricopeptide_repeat 344 367
IPR002885 Pentatricopeptide_repeat 215 247
IPR002885 Pentatricopeptide_repeat 471 518
IPR002885 Pentatricopeptide_repeat 370 416
IPR002885 Pentatricopeptide_repeat 124 153
IPR002885 Pentatricopeptide_repeat 279 306
IPR002885 Pentatricopeptide_repeat 611 640
IPR002885 Pentatricopeptide_repeat 155 184
IPR002885 Pentatricopeptide_repeat 95 122
IPR002885 Pentatricopeptide_repeat 546 569
IPR002885 Pentatricopeptide_repeat 445 470
IPR002885 Pentatricopeptide_repeat 310 340
IPR002885 Pentatricopeptide_repeat 248 278
No external refs found!