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Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 521.0)
Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0056616 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0049540 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_38897 | |
| Cluster | HCCA: Cluster_229 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_21016 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.05 | Archaeplastida | |
| Gb_27291 | No alias | Pentatricopeptide repeat-containing protein At2g22070... | 0.05 | Archaeplastida | |
| MA_129805g0010 | No alias | Pentatricopeptide repeat-containing protein At4g39530... | 0.04 | Archaeplastida | |
| MA_130999g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.04 | Archaeplastida | |
| MA_137736g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.05 | Archaeplastida | |
| MA_140985g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida | |
| MA_820066g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 343 | 390 |
| IPR002885 | Pentatricopeptide_repeat | 506 | 553 |
| IPR002885 | Pentatricopeptide_repeat | 606 | 655 |
| IPR002885 | Pentatricopeptide_repeat | 149 | 196 |
| IPR002885 | Pentatricopeptide_repeat | 446 | 474 |
| IPR002885 | Pentatricopeptide_repeat | 283 | 313 |
| IPR002885 | Pentatricopeptide_repeat | 418 | 440 |
| IPR002885 | Pentatricopeptide_repeat | 681 | 706 |
| IPR002885 | Pentatricopeptide_repeat | 224 | 250 |
| IPR002885 | Pentatricopeptide_repeat | 252 | 281 |
| No external refs found! |