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Gb_39139


Description : High mobility group B protein 15 OS=Arabidopsis thaliana (sp|q9mat6|hmg15_arath : 227.0)


Gene families : OG0000729 (Archaeplastida) Phylogenetic Tree(s): OG0000729_tree ,
OG_05_0010019 (LandPlants) Phylogenetic Tree(s): OG_05_0010019_tree ,
OG_06_0013562 (SeedPlants) Phylogenetic Tree(s): OG_06_0013562_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39139
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
MA_2809g0010 No alias High mobility group B protein 15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c7_23660V3.1 No alias HMG (high mobility group) box protein with ARID/BRIGHT... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001606 ARID_dom 112 195
IPR009071 HMG_box_dom 344 408
No external refs found!