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  5. Gb_39465

Gb_39465


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 592.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39465

Target Alias Description ECC score Gene Family Method Actions
Gb_00206 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_01648 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_02031 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_02060 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_03137 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_03597 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_04080 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_04417 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_04616 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_05127 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
Gb_05883 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_05939 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_07635 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_08560 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_08745 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_09702 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_10133 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_10151 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_10985 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_11523 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_12372 No alias RNA editing factor (OTP82) 0.1 Archaeplastida
Gb_12555 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_14403 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_14445 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_15507 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_15639 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.12 Archaeplastida
Gb_16366 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_16828 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_16848 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_16955 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_17094 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_18728 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_20266 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_21430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_22477 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.06 Archaeplastida
Gb_22613 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_23084 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_23605 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_24674 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_25359 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_25604 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_26501 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_26696 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_26723 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_27468 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_28279 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_29868 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_29877 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_29879 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_30991 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_32456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_33136 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_33575 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_33719 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_34297 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_35407 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_36085 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_36177 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_36614 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_37396 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_38750 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_38751 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_39560 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_40472 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.25 Archaeplastida
MA_124907g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.2 Archaeplastida
MA_38266g0010 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.06 Archaeplastida
MA_79624g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
MA_921g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.25 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 725 803
IPR002885 Pentatricopeptide_repeat 425 451
IPR002885 Pentatricopeptide_repeat 453 479
IPR002885 Pentatricopeptide_repeat 627 651
IPR002885 Pentatricopeptide_repeat 249 294
IPR002885 Pentatricopeptide_repeat 551 599
IPR002885 Pentatricopeptide_repeat 350 397
IPR002885 Pentatricopeptide_repeat 147 195
No external refs found!