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Description : Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana (sp|q8vze4|pp299_arath : 453.0)
Gene families : OG0010481 (Archaeplastida) Phylogenetic Tree(s): OG0010481_tree ,
OG_05_0010472 (LandPlants) Phylogenetic Tree(s): OG_05_0010472_tree ,
OG_06_0009439 (SeedPlants) Phylogenetic Tree(s): OG_06_0009439_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_39532 | |
| Cluster | HCCA: Cluster_4 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| LOC_Os03g50500.1 | No alias | Pentatricopeptide repeat-containing protein At4g01570... | 0.03 | Archaeplastida | |
| MA_44142g0010 | No alias | Pentatricopeptide repeat-containing protein At4g01570... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0004609 | phosphatidylserine decarboxylase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0006644 | phospholipid metabolic process | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009719 | response to endogenous stimulus | IEP | Neighborhood |
| BP | GO:0009725 | response to hormone | IEP | Neighborhood |
| BP | GO:0010033 | response to organic substance | IEP | Neighborhood |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | Neighborhood |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | Neighborhood |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Neighborhood |
| MF | GO:0016831 | carboxy-lyase activity | IEP | Neighborhood |
| MF | GO:0019899 | enzyme binding | IEP | Neighborhood |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Neighborhood |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Neighborhood |
| BP | GO:0042221 | response to chemical | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0051213 | dioxygenase activity | IEP | Neighborhood |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 93 | 122 |
| IPR002885 | Pentatricopeptide_repeat | 661 | 690 |
| IPR002885 | Pentatricopeptide_repeat | 128 | 156 |
| IPR002885 | Pentatricopeptide_repeat | 165 | 193 |
| IPR002885 | Pentatricopeptide_repeat | 765 | 795 |
| IPR002885 | Pentatricopeptide_repeat | 234 | 263 |
| IPR002885 | Pentatricopeptide_repeat | 797 | 840 |
| IPR002885 | Pentatricopeptide_repeat | 406 | 453 |
| IPR002885 | Pentatricopeptide_repeat | 692 | 740 |
| IPR002885 | Pentatricopeptide_repeat | 265 | 314 |
| IPR002885 | Pentatricopeptide_repeat | 337 | 384 |
| No external refs found! |