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Gb_39550


Description : C3H zinc finger transcription factor


Gene families : OG0000421 (Archaeplastida) Phylogenetic Tree(s): OG0000421_tree ,
OG_05_0000820 (LandPlants) Phylogenetic Tree(s): OG_05_0000820_tree ,
OG_06_0001649 (SeedPlants) Phylogenetic Tree(s): OG_06_0001649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39550
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AT1G04990 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 Archaeplastida
LOC_Os06g32720.1 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
Mp2g10620.1 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Pp3c4_29750V3.1 No alias zinc finger protein 1 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 317 341
IPR000571 Znf_CCCH 271 296
IPR000571 Znf_CCCH 65 91
IPR000571 Znf_CCCH 25 49
IPR000571 Znf_CCCH 113 137
No external refs found!