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  5. Gb_39595

Gb_39595


Description : pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0004417 (SeedPlants) Phylogenetic Tree(s): OG_06_0004417_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39595
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AT1G05310 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G11370 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT2G36700 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G47280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G19730 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01000525001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01009729001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01013838001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01018823001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
Gb_01459 No alias pectin methylesterase 0.04 Archaeplastida
Gb_01460 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os05g44600.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os09g39760.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os12g37660.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_181657g0020 No alias pectin methylesterase 0.02 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp1g17560.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.05 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c16_6660V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c19_8330V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc01g109740.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc05g053680.1.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.07 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 136 429
No external refs found!