AT3G04620

Description : Alba DNA/RNA-binding protein

Gene families : OG0000764 (Archaeplastida) Phylogenetic Tree(s): OG0000764_tree ,
OG_05_0048233 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0043114 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G04620
Cluster	HCCA: Cluster_268

Target	Alias	Description	ECC score	Gene Family Method	Actions
Mp6g20280.1	No alias	R-loop reader protein (ALBA1/2)	0.02	Archaeplastida
Pp3c12_20320V3.1	No alias	Alba DNA/RNA-binding protein	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010212	response to ionizing radiation	None	Extended
BP	GO:0010332	response to gamma radiation	RCA	Interproscan
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048235	pollen sperm cell differentiation	IEP	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	IEP	Neighborhood
BP	GO:0000719	photoreactive repair	IEP	Neighborhood
CC	GO:0000808	origin recognition complex	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0003913	DNA photolyase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005887	integral component of plasma membrane	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006290	pyrimidine dimer repair	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008143	poly(A) binding	IEP	Neighborhood
MF	GO:0008474	palmitoyl-(protein) hydrolase activity	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009566	fertilization	IEP	Neighborhood
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	Neighborhood
BP	GO:0009650	UV protection	IEP	Neighborhood
CC	GO:0009898	cytoplasmic side of plasma membrane	IEP	Neighborhood
BP	GO:0010098	suspensor development	IEP	Neighborhood
MF	GO:0010175	sphingosine transmembrane transporter activity	IEP	Neighborhood
BP	GO:0010466	negative regulation of peptidase activity	IEP	Neighborhood
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	Neighborhood
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015166	polyol transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015204	urea transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015665	alcohol transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015840	urea transport	IEP	Neighborhood
BP	GO:0016567	protein ubiquitination	IEP	Neighborhood
BP	GO:0019755	one-carbon compound transport	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
BP	GO:0030162	regulation of proteolysis	IEP	Neighborhood
MF	GO:0032442	phenylcoumaran benzylic ether reductase activity	IEP	Neighborhood
BP	GO:0032446	protein modification by small protein conjugation	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0045861	negative regulation of proteolysis	IEP	Neighborhood
MF	GO:0046624	sphingolipid transporter activity	IEP	Neighborhood
CC	GO:0048555	generative cell nucleus	IEP	Neighborhood
BP	GO:0048598	embryonic morphogenesis	IEP	Neighborhood
BP	GO:0051346	negative regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0051865	protein autoubiquitination	IEP	Neighborhood
BP	GO:0052547	regulation of peptidase activity	IEP	Neighborhood
BP	GO:0052548	regulation of endopeptidase activity	IEP	Neighborhood
MF	GO:0070717	poly-purine tract binding	IEP	Neighborhood
BP	GO:0080159	zygote elongation	IEP	Neighborhood
CC	GO:0098552	side of membrane	IEP	Neighborhood
CC	GO:0098562	cytoplasmic side of membrane	IEP	Neighborhood
MF	GO:0098599	palmitoyl hydrolase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002775	DNA/RNA-bd_Alba-like	38	100

External Links

No external refs found!

AT3G04620

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation