AT3G04670 (WRKY39, ATWRKY39)

Aliases : WRKY39, ATWRKY39

Description : WRKY DNA-binding protein 39

Gene families : OG0000007 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000087 (LandPlants) Phylogenetic Tree(s): OG_05_0000087_tree ,
OG_06_0000067 (SeedPlants) Phylogenetic Tree(s): OG_06_0000067_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G04670
Cluster	HCCA: Cluster_263

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00165950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.WRKY...	0.04	Archaeplastida
AMTR_s00078p00171140	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
AT3G58710	ATWRKY69, WRKY69	WRKY DNA-binding protein 69	0.03	Archaeplastida
AT5G13080	WRKY75, ATWRKY75	WRKY DNA-binding protein 75	0.03	Archaeplastida
GSVIVT01021765001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
GSVIVT01025562001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
GSVIVT01029688001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
Gb_25547	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Gb_40257	No alias	transcription factor (WRKY)	0.02	Archaeplastida
LOC_Os01g14440.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
LOC_Os01g18584.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os03g20550.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
LOC_Os03g53050.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
LOC_Os04g46060.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os05g39720.1	No alias	transcription factor (WRKY). transcription factor (WRKY33)	0.03	Archaeplastida
LOC_Os09g16510.1	No alias	transcription factor (WRKY)	0.05	Archaeplastida
LOC_Os09g30400.3	No alias	transcription factor (WRKY)	0.04	Archaeplastida
LOC_Os11g29870.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
LOC_Os12g32250.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
MA_268327g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_7831917g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Pp3c14_17020V3.1	No alias	WRKY DNA-binding protein 7	0.02	Archaeplastida
Pp3c8_4400V3.1	No alias	WRKY DNA-binding protein 2	0.02	Archaeplastida
Solyc02g072190.4.1	No alias	No annotation	0.03	Archaeplastida
Solyc02g080890.3.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Solyc04g051690.4.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc07g056280.3.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc10g009550.3.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc12g006170.2.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e003146_P002	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e005078_P002	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Zm00001e005626_P001	No alias	No annotation	0.05	Archaeplastida
Zm00001e007834_P002	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Zm00001e011098_P001	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Zm00001e015980_P001	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e019827_P003	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e027989_P001	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e029049_P001	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Zm00001e029445_P001	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Zm00001e031901_P001	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e040369_P001	No alias	transcription factor (WRKY)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005516	calmodulin binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	IC	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	Neighborhood
BP	GO:0000354	cis assembly of pre-catalytic spliceosome	IEP	Neighborhood
CC	GO:0000813	ESCRT I complex	IEP	Neighborhood
BP	GO:0001709	cell fate determination	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
MF	GO:0004034	aldose 1-epimerase activity	IEP	Neighborhood
MF	GO:0004364	glutathione transferase activity	IEP	Neighborhood
MF	GO:0005484	SNAP receptor activity	IEP	Neighborhood
CC	GO:0005615	extracellular space	IEP	Neighborhood
CC	GO:0005654	nucleoplasm	IEP	Neighborhood
CC	GO:0005663	DNA replication factor C complex	IEP	Neighborhood
CC	GO:0005681	spliceosomal complex	IEP	Neighborhood
CC	GO:0005686	U2 snRNP	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
CC	GO:0005819	spindle	IEP	Neighborhood
BP	GO:0006012	galactose metabolic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0007049	cell cycle	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
BP	GO:0008356	asymmetric cell division	IEP	Neighborhood
BP	GO:0009404	toxin metabolic process	IEP	Neighborhood
BP	GO:0009407	toxin catabolic process	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009629	response to gravity	IEP	Neighborhood
BP	GO:0009630	gravitropism	IEP	Neighborhood
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009909	regulation of flower development	IEP	Neighborhood
BP	GO:0009956	radial pattern formation	IEP	Neighborhood
BP	GO:0010262	somatic embryogenesis	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
CC	GO:0015030	Cajal body	IEP	Neighborhood
BP	GO:0016567	protein ubiquitination	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
CC	GO:0016604	nuclear body	IEP	Neighborhood
CC	GO:0016607	nuclear speck	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Neighborhood
BP	GO:0022622	root system development	IEP	Neighborhood
CC	GO:0030427	site of polarized growth	IEP	Neighborhood
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
BP	GO:0032446	protein modification by small protein conjugation	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
CC	GO:0036452	ESCRT complex	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0043295	glutathione binding	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
CC	GO:0044421	extracellular region part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048449	floral organ formation	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051457	maintenance of protein location in nucleus	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Neighborhood
MF	GO:0072341	modified amino acid binding	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood
CC	GO:0097525	spliceosomal snRNP complex	IEP	Neighborhood
BP	GO:0098754	detoxification	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
CC	GO:0120114	Sm-like protein family complex	IEP	Neighborhood
MF	GO:1900750	oligopeptide binding	IEP	Neighborhood
MF	GO:1901681	sulfur compound binding	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000241	regulation of reproductive process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR018872	Zn-cluster-dom	222	259
IPR003657	WRKY_dom	263	319

External Links

No external refs found!

AT3G04670 (WRKY39, ATWRKY39)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation