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Description : Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana (sp|q9ss83|pp220_arath : 590.0)
Gene families : OG0078192 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0065052 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0058649 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_40503 | |
| Cluster | HCCA: Cluster_241 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006298 | mismatch repair | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0030983 | mismatched DNA binding | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 957 | 1011 |
| IPR002885 | Pentatricopeptide_repeat | 240 | 286 |
| IPR002885 | Pentatricopeptide_repeat | 48 | 84 |
| IPR002885 | Pentatricopeptide_repeat | 784 | 831 |
| IPR002885 | Pentatricopeptide_repeat | 613 | 647 |
| IPR002885 | Pentatricopeptide_repeat | 476 | 522 |
| IPR002885 | Pentatricopeptide_repeat | 682 | 730 |
| IPR002885 | Pentatricopeptide_repeat | 341 | 377 |
| IPR002885 | Pentatricopeptide_repeat | 416 | 441 |
| IPR002885 | Pentatricopeptide_repeat | 142 | 171 |
| IPR002885 | Pentatricopeptide_repeat | 587 | 612 |
| IPR002885 | Pentatricopeptide_repeat | 861 | 883 |
| IPR002885 | Pentatricopeptide_repeat | 650 | 679 |
| IPR002885 | Pentatricopeptide_repeat | 928 | 953 |
| IPR002885 | Pentatricopeptide_repeat | 444 | 473 |
| No external refs found! |