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  5. Gb_40875

Gb_40875


Description : component Pfs2/FY of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0005339 (Archaeplastida) Phylogenetic Tree(s): OG0005339_tree ,
OG_05_0007249 (LandPlants) Phylogenetic Tree(s): OG_05_0007249_tree ,
OG_06_0007786 (SeedPlants) Phylogenetic Tree(s): OG_06_0007786_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_40875
Cluster HCCA: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00063p00034480 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 Archaeplastida
Cre06.g251951 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 Archaeplastida
LOC_Os01g72220.1 No alias component Pfs2/FY of Cleavage and Polyadenylation... 0.03 Archaeplastida
Solyc08g067040.4.1 No alias component Pfs2/FY of Cleavage and Polyadenylation... 0.03 Archaeplastida
Zm00001e018628_P002 No alias component Pfs2/FY of Cleavage and Polyadenylation... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 203 240
IPR001680 WD40_repeat 122 155
IPR001680 WD40_repeat 245 282
IPR001680 WD40_repeat 167 198
IPR001680 WD40_repeat 288 324
IPR001680 WD40_repeat 337 367
No external refs found!