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  5. Gb_41161

Gb_41161


Description : component LHCb1/2/3 of LHC-II complex


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0000162 (LandPlants) Phylogenetic Tree(s): OG_05_0000162_tree ,
OG_06_0010945 (SeedPlants) Phylogenetic Tree(s): OG_06_0010945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41161
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00268360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00010p00264770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
AMTR_s00013p00180670 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
AMTR_s00029p00239610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00045p00069900 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00045p00070890 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00061p00059490 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
AMTR_s00088p00153020 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.04 Archaeplastida
AMTR_s00153p00078810 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00175p00040360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AT5G28450 No alias Chlorophyll A-B binding family protein 0.04 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre03.g156900 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre04.g232104 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.02 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre06.g284250 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.02 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.02 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.02 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.01 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
GSVIVT01009498001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01021406001 No alias Chlorophyll a-b binding protein 2, chloroplastic... 0.03 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.05 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
LOC_Os01g52240.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os02g10390.1 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
LOC_Os03g39610.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
LOC_Os04g38410.1 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
LOC_Os07g37550.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
LOC_Os08g33820.1 No alias component LHCa4 of LHC-I complex 0.04 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os11g13890.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
MA_10431493g0010 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_267089g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.04 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.03 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida
Pp3c10_25360V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.05 Archaeplastida
Pp3c12_25430V3.1 No alias light harvesting complex photosystem II 0.05 Archaeplastida
Pp3c12_25460V3.1 No alias light harvesting complex photosystem II 0.02 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.06 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.04 Archaeplastida
Pp3c1_34240V3.1 No alias light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
Pp3c20_23240V3.1 No alias photosystem I light harvesting complex gene 2 0.05 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c26_12230V3.1 No alias light harvesting complex of photosystem II 5 0.05 Archaeplastida
Pp3c26_12240V3.1 No alias light harvesting complex of photosystem II 5 0.04 Archaeplastida
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c27_7010V3.1 No alias photosystem I light harvesting complex gene 3 0.04 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.04 Archaeplastida
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c2_36380V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c2_36570V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.04 Archaeplastida
Pp3c4_28370V3.1 No alias light harvesting complex of photosystem II 5 0.03 Archaeplastida
Pp3c4_29150V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_29270V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.04 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.04 Archaeplastida
Solyc01g105030.3.1 No alias component LHCb6 of LHC-II complex 0.09 Archaeplastida
Solyc01g105050.3.1 No alias component LHCb6 of LHC-II complex 0.09 Archaeplastida
Solyc02g070940.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 Archaeplastida
Solyc02g070950.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 Archaeplastida
Solyc02g070970.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Solyc02g070980.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Solyc02g070990.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Solyc02g071000.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Solyc02g071010.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 Archaeplastida
Solyc02g071030.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.1 Archaeplastida
Solyc03g005760.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
Solyc03g005770.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc03g005780.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Solyc03g115900.4.1 No alias component LHCa4 of LHC-I complex 0.04 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.06 Archaeplastida
Solyc06g063370.3.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
Solyc06g069730.3.1 No alias component LHCa4 of LHC-I complex 0.08 Archaeplastida
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 Archaeplastida
Solyc07g063600.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Solyc08g067320.3.1 No alias Chlorophyll a-b binding protein 3A, chloroplastic... 0.08 Archaeplastida
Solyc08g067330.1.1 No alias Chlorophyll a-b binding protein 16, chloroplastic... 0.11 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
Solyc10g006230.3.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
Solyc10g007690.3.1 No alias component LHCa3 of LHC-I complex 0.05 Archaeplastida
Solyc12g006140.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc12g009200.2.1 No alias component LHCa6 of LHC-I complex 0.02 Archaeplastida
Solyc12g011280.2.1 No alias component LHCa3 of LHC-I complex 0.06 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.04 Archaeplastida
Zm00001e004940_P001 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e004941_P001 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.04 Archaeplastida
Zm00001e010547_P001 No alias component LHCb4 of LHC-II complex 0.04 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Zm00001e025141_P001 No alias component LHCa1 of LHC-I complex 0.05 Archaeplastida
Zm00001e026547_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e032450_P001 No alias Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.04 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.05 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Zm00001e035249_P001 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida
Zm00001e041918_P001 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006952 defense response IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 71 238
No external refs found!