Gb_41592


Description : SSU processome assembly factor (RRP9/YAO1)


Gene families : OG0005550 (Archaeplastida) Phylogenetic Tree(s): OG0005550_tree ,
OG_05_0006984 (LandPlants) Phylogenetic Tree(s): OG_05_0006984_tree ,
OG_06_0007863 (SeedPlants) Phylogenetic Tree(s): OG_06_0007863_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41592
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00078230 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
AT4G05410 YAO Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
Cpa|evm.model.tig00021179.21 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Cre06.g278175 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
GSVIVT01021618001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
LOC_Os03g42770.1 No alias SSU processome assembly factor (RRP9/YAO1) 0.1 Archaeplastida
MA_10426194g0010 No alias SSU processome assembly factor (RRP9/YAO1) 0.07 Archaeplastida
Mp8g03800.1 No alias SSU processome assembly factor (RRP9/YAO1) 0.07 Archaeplastida
Pp3c13_22280V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Pp3c15_1000V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Archaeplastida
Solyc02g069770.3.1 No alias SSU processome assembly factor (RRP9/YAO1) 0.09 Archaeplastida
Zm00001e005033_P001 No alias SSU processome assembly factor (RRP9/YAO1) 0.08 Archaeplastida
Zm00001e012407_P002 No alias SSU processome assembly factor (RRP9/YAO1) 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 241 277
IPR001680 WD40_repeat 284 318
IPR001680 WD40_repeat 873 898
IPR001680 WD40_repeat 735 770
IPR001680 WD40_repeat 207 235
No external refs found!