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  5. Gb_41674

Gb_41674


Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana (sp|q9lvq5|pp432_arath : 473.0)


Gene families : OG0010121 (Archaeplastida) Phylogenetic Tree(s): OG0010121_tree ,
OG_05_0010541 (LandPlants) Phylogenetic Tree(s): OG_05_0010541_tree ,
OG_06_0010187 (SeedPlants) Phylogenetic Tree(s): OG_06_0010187_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41674
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00087550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g26790,... 0.02 Archaeplastida
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.03 Archaeplastida
Solyc05g012920.3.1 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.03 Archaeplastida
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 228 256
IPR002885 Pentatricopeptide_repeat 1286 1313
IPR002885 Pentatricopeptide_repeat 1044 1069
IPR002885 Pentatricopeptide_repeat 713 760
IPR002885 Pentatricopeptide_repeat 1141 1190
IPR002885 Pentatricopeptide_repeat 830 875
IPR002885 Pentatricopeptide_repeat 538 587
IPR002885 Pentatricopeptide_repeat 1211 1260
IPR002885 Pentatricopeptide_repeat 899 945
IPR002885 Pentatricopeptide_repeat 258 307
IPR002885 Pentatricopeptide_repeat 967 1015
IPR002885 Pentatricopeptide_repeat 328 377
IPR002885 Pentatricopeptide_repeat 1320 1364
IPR002885 Pentatricopeptide_repeat 433 482
IPR002885 Pentatricopeptide_repeat 1386 1434
IPR002885 Pentatricopeptide_repeat 1454 1484
IPR002885 Pentatricopeptide_repeat 396 425
IPR002885 Pentatricopeptide_repeat 500 531
IPR002885 Pentatricopeptide_repeat 605 637
IPR002885 Pentatricopeptide_repeat 640 671
IPR002885 Pentatricopeptide_repeat 674 706
IPR002885 Pentatricopeptide_repeat 1103 1133
No external refs found!