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  5. AT3G06430

AT3G06430 (EMB2750)


Aliases : EMB2750

Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000306 (Archaeplastida) Phylogenetic Tree(s): OG0000306_tree ,
OG_05_0001965 (LandPlants) Phylogenetic Tree(s): OG_05_0001965_tree ,
OG_06_0010885 (SeedPlants) Phylogenetic Tree(s): OG_06_0010885_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G06430
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.06 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 Archaeplastida
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
Gb_38049 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.04 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.07 Archaeplastida
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.12 Archaeplastida
MA_10432680g0020 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.05 Archaeplastida
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 Archaeplastida
Solyc03g120510.1.1 No alias Protein THYLAKOID ASSEMBLY 8, chloroplastic... 0.03 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.04 Archaeplastida
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.03 Archaeplastida
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.03 Archaeplastida
Zm00001e025825_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009553 embryo sac development IMP Interproscan
BP GO:0009555 pollen development IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
MF GO:0019843 rRNA binding IDA Interproscan
BP GO:0048868 pollen tube development IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008356 asymmetric cell division IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
CC GO:0009528 plastid inner membrane IEP Neighborhood
CC GO:0009535 chloroplast thylakoid membrane IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009668 plastid membrane organization IEP Neighborhood
CC GO:0009706 chloroplast inner membrane IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
BP GO:0009765 photosynthesis, light harvesting IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
BP GO:0010027 thylakoid membrane organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0031425 chloroplast RNA processing IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031969 chloroplast membrane IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0042170 plastid membrane IEP Neighborhood
BP GO:0042335 cuticle development IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0045036 protein targeting to chloroplast IEP Neighborhood
BP GO:0045037 protein import into chloroplast stroma IEP Neighborhood
CC GO:0055035 plastid thylakoid membrane IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072596 establishment of protein localization to chloroplast IEP Neighborhood
BP GO:0072598 protein localization to chloroplast IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 303 330
IPR002885 Pentatricopeptide_repeat 126 155
IPR002885 Pentatricopeptide_repeat 405 451
IPR002885 Pentatricopeptide_repeat 228 275
IPR002885 Pentatricopeptide_repeat 157 206
IPR002885 Pentatricopeptide_repeat 336 383
No external refs found!