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  5. Gb_41819

Gb_41819


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 321.0)


Gene families : OG0005116 (Archaeplastida) Phylogenetic Tree(s): OG0005116_tree ,
OG_05_0003310 (LandPlants) Phylogenetic Tree(s): OG_05_0003310_tree ,
OG_06_0002023 (SeedPlants) Phylogenetic Tree(s): OG_06_0002023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41819
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
Gb_03574 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Gb_04000 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.05 Archaeplastida
Gb_05494 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_24906 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Gb_29189 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Neighborhood
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!