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  5. Zm00001e000416_P002

Zm00001e000416_P002


Description : platform ATPase (CDC48)


Gene families : OG0000169 (Archaeplastida) Phylogenetic Tree(s): OG0000169_tree ,
OG_05_0001221 (LandPlants) Phylogenetic Tree(s): OG_05_0001221_tree ,
OG_06_0001614 (SeedPlants) Phylogenetic Tree(s): OG_06_0001614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000416_P002
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.06 Archaeplastida
AMTR_s00085p00052820 evm_27.TU.AmTr_v1... Cell division cycle protein 48 homolog OS=Glycine max 0.03 Archaeplastida
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.03 Archaeplastida
GSVIVT01025723001 No alias Cell division control protein 48 homolog D... 0.02 Archaeplastida
GSVIVT01025783001 No alias Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os04g52690.3 No alias component Pex6 of Pex1-Pex6 subcomplex 0.05 Archaeplastida
LOC_Os11g11340.1 No alias Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 Archaeplastida
MA_10427366g0010 No alias Cell division control protein 48 homolog B... 0.02 Archaeplastida
Mp3g20500.1 No alias Cell division control protein 48 homolog B... 0.02 Archaeplastida
Pp3c4_26860V3.1 No alias ATPase, AAA-type, CDC48 protein 0.03 Archaeplastida
Pp3c8_20390V3.1 No alias peroxisome 1 0.02 Archaeplastida
Solyc01g068330.4.1 No alias Cell division control protein 48 homolog C... 0.07 Archaeplastida
Solyc06g074980.3.1 No alias platform ATPase (CDC48) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003338 CDC4_N-term_subdom 31 112
IPR003959 ATPase_AAA_core 246 375
IPR003959 ATPase_AAA_core 519 652
IPR004201 Cdc48_dom2 132 196
No external refs found!