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  5. Zm00001e000477_P001

Zm00001e000477_P001


Description : Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana (sp|q9ls88|pp250_arath : 725.0)


Gene families : OG0003733 (Archaeplastida) Phylogenetic Tree(s): OG0003733_tree ,
OG_05_0003722 (LandPlants) Phylogenetic Tree(s): OG_05_0003722_tree ,
OG_06_0003603 (SeedPlants) Phylogenetic Tree(s): OG_06_0003603_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000477_P001
Cluster HCCA: Cluster_353

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g23020... 0.03 Archaeplastida
AMTR_s00003p00261700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73710... 0.04 Archaeplastida
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Archaeplastida
GSVIVT01018090001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 Archaeplastida
Gb_07316 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
Gb_11434 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.02 Archaeplastida
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_29869 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os03g06710.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.05 Archaeplastida
LOC_Os07g28900.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.11 Archaeplastida
MA_102823g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
MA_118886g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.06 Archaeplastida
MA_185599g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_547597g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g054480.3.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 546 605
IPR002885 Pentatricopeptide_repeat 454 499
IPR002885 Pentatricopeptide_repeat 700 738
IPR002885 Pentatricopeptide_repeat 247 292
IPR002885 Pentatricopeptide_repeat 135 183
IPR002885 Pentatricopeptide_repeat 320 348
IPR002885 Pentatricopeptide_repeat 633 660
IPR002885 Pentatricopeptide_repeat 354 384
No external refs found!