AT1G12220 (RPS5)

Aliases : RPS5

Description : Disease resistance protein (CC-NBS-LRR class) family

Gene families : OG0000053 (Archaeplastida) Phylogenetic Tree(s): OG0000053_tree ,
OG_05_0000018 (LandPlants) Phylogenetic Tree(s): OG_05_0000018_tree ,
OG_06_0000005 (SeedPlants) Phylogenetic Tree(s): OG_06_0000005_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G12220
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00005p00238210	evm_27.TU.AmTr_v1...	Probable disease resistance protein At4g14610...	0.02	Archaeplastida
AMTR_s00009p00126150	evm_27.TU.AmTr_v1...	Disease resistance protein RPS5 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00009p00261740	evm_27.TU.AmTr_v1...	No description available	0.04	Archaeplastida
AMTR_s00019p00088510	evm_27.TU.AmTr_v1...	No description available	0.05	Archaeplastida
AMTR_s00050p00210650	evm_27.TU.AmTr_v1...	Putative disease resistance protein At1g63350...	0.04	Archaeplastida
AMTR_s00056p00141280	evm_27.TU.AmTr_v1...	No description available	0.05	Archaeplastida
AMTR_s00071p00163290	evm_27.TU.AmTr_v1...	Probable disease resistance protein At4g27220...	0.03	Archaeplastida
AMTR_s00071p00163330	evm_27.TU.AmTr_v1...	Probable disease resistance protein At5g63020...	0.04	Archaeplastida
AMTR_s00078p00177570	evm_27.TU.AmTr_v1...	Disease resistance protein RPS2 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00078p00178290	evm_27.TU.AmTr_v1...	No description available	0.04	Archaeplastida
AMTR_s00099p00016360	evm_27.TU.AmTr_v1...	No description available	0.07	Archaeplastida
AMTR_s00101p00133980	evm_27.TU.AmTr_v1...	Disease resistance protein RFL1 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00121p00125720	evm_27.TU.AmTr_v1...	Probable disease resistance protein At1g61180...	0.02	Archaeplastida
AMTR_s00142p00041790	evm_27.TU.AmTr_v1...	Disease resistance protein RPS2 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT1G12210	RFL1	RPS5-like 1	0.07	Archaeplastida
AT1G12280	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.08	Archaeplastida
AT1G12290	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.06	Archaeplastida
AT1G61180	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.1	Archaeplastida
AT1G61310	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.08	Archaeplastida
AT4G26090	RPS2	NB-ARC domain-containing disease resistance protein	0.09	Archaeplastida
AT5G43730	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.09	Archaeplastida
AT5G43740	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.05	Archaeplastida
AT5G47250	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.06	Archaeplastida
AT5G47260	No alias	ATP binding;GTP binding;nucleotide...	0.06	Archaeplastida
GSVIVT01014595001	No alias	Disease resistance protein At4g27190 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01017020001	No alias	Probable disease resistance protein At5g63020...	0.04	Archaeplastida
GSVIVT01017227001	No alias	No description available	0.04	Archaeplastida
GSVIVT01017232001	No alias	Disease resistance protein SUMM2 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01034252001	No alias	Probable disease resistance protein At1g61300...	0.05	Archaeplastida
GSVIVT01038404001	No alias	Probable disease resistance protein At1g12290...	0.06	Archaeplastida
Gb_12853	No alias	Disease resistance protein RPS2 OS=Arabidopsis thaliana...	0.07	Archaeplastida
LOC_Os01g57870.1	No alias	Disease resistance protein RPS2 OS=Arabidopsis thaliana...	0.04	Archaeplastida
MA_10265639g0010	No alias	Disease resistance protein RPS2 OS=Arabidopsis thaliana...	0.04	Archaeplastida
MA_10436071g0020	No alias	Probable disease resistance protein At4g27220...	0.04	Archaeplastida
MA_10436967g0010	No alias	Disease resistance protein RPS5 OS=Arabidopsis thaliana...	0.04	Archaeplastida
MA_162415g0010	No alias	Probable disease resistance protein At1g61310...	0.04	Archaeplastida
MA_23524g0010	No alias	Disease resistance protein RPS5 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_5730007g0010	No alias	Disease resistance protein RFL1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
MA_834155g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
Solyc08g013970.3.1	No alias	Probable disease resistance protein At4g27220...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IMP	Interproscan
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006497	protein lipidation	None	Extended
BP	GO:0006498	N-terminal protein lipidation	None	Extended
BP	GO:0006499	N-terminal protein myristoylation	IDA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IMP	Interproscan
BP	GO:0006952	defense response	TAS	Interproscan
BP	GO:0006955	immune response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008219	cell death	IMP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009626	plant-type hypersensitive response	IMP	Interproscan
BP	GO:0009814	defense response, incompatible interaction	None	Extended
BP	GO:0009816	defense response to bacterium, incompatible interaction	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0012501	programmed cell death	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0018377	protein myristoylation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031365	N-terminal protein amino acid modification	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034050	host programmed cell death induced by symbiont	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0038023	signaling receptor activity	IMP	Interproscan
BP	GO:0042742	defense response to bacterium	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004329	formate-tetrahydrofolate ligase activity	IEP	Neighborhood
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	Neighborhood
MF	GO:0005102	signaling receptor binding	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Neighborhood
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0009835	fruit ripening	IEP	Neighborhood
BP	GO:0010118	stomatal movement	IEP	Neighborhood
BP	GO:0010483	pollen tube reception	IEP	Neighborhood
CC	GO:0012505	endomembrane system	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0019902	phosphatase binding	IEP	Neighborhood
MF	GO:0019903	protein phosphatase binding	IEP	Neighborhood
BP	GO:0032880	regulation of protein localization	IEP	Neighborhood
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0042126	nitrate metabolic process	IEP	Neighborhood
BP	GO:0042128	nitrate assimilation	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0044703	multi-organism reproductive process	IEP	Neighborhood
BP	GO:0046686	response to cadmium ion	IEP	Neighborhood
BP	GO:0051703	intraspecies interaction between organisms	IEP	Neighborhood
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Neighborhood
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	541	597
IPR002182	NB-ARC	161	402

External Links

No external refs found!

AT1G12220 (RPS5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation