AT3G07850

Description : Pectin lyase-like superfamily protein

Gene families : OG0000535 (Archaeplastida) Phylogenetic Tree(s): OG0000535_tree ,
OG_05_0000281 (LandPlants) Phylogenetic Tree(s): OG_05_0000281_tree ,
OG_06_0000124 (SeedPlants) Phylogenetic Tree(s): OG_06_0000124_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G07850
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00270640	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.06	Archaeplastida
AT3G07820	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
AT3G07840	No alias	Pectin lyase-like superfamily protein	0.07	Archaeplastida
GSVIVT01028044001	No alias	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01030017001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.03	Archaeplastida
GSVIVT01030023001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.03	Archaeplastida
GSVIVT01035103001	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia	0.04	Archaeplastida
LOC_Os01g33300.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.05	Archaeplastida
LOC_Os02g10300.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.07	Archaeplastida
LOC_Os06g35320.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.03	Archaeplastida
Solyc01g066070.3.1	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.04	Archaeplastida
Solyc06g009200.3.1	No alias	Polygalacturonase OS=Nicotiana tabacum...	0.04	Archaeplastida
Solyc07g044870.4.1	No alias	Polygalacturonase OS=Nicotiana tabacum...	0.04	Archaeplastida
Zm00001e022246_P002	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.02	Archaeplastida
Zm00001e025021_P003	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	Archaeplastida
Zm00001e026354_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	Archaeplastida
Zm00001e030524_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.05	Archaeplastida
Zm00001e030528_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.03	Archaeplastida
Zm00001e030529_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.06	Archaeplastida
Zm00001e030530_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.09	Archaeplastida
Zm00001e030533_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	Archaeplastida
Zm00001e030534_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	Archaeplastida
Zm00001e030535_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	Archaeplastida
Zm00001e030537_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	Archaeplastida
Zm00001e042494_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Neighborhood
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Neighborhood
MF	GO:0004602	glutathione peroxidase activity	IEP	Neighborhood
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
CC	GO:0005938	cell cortex	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009687	abscisic acid metabolic process	IEP	Neighborhood
BP	GO:0009688	abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009827	plant-type cell wall modification	IEP	Neighborhood
BP	GO:0009846	pollen germination	IEP	Neighborhood
BP	GO:0009860	pollen tube growth	IEP	Neighborhood
BP	GO:0009865	pollen tube adhesion	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0010191	mucilage metabolic process	IEP	Neighborhood
BP	GO:0010192	mucilage biosynthetic process	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010214	seed coat development	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
MF	GO:0015385	sodium:proton antiporter activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
CC	GO:0030133	transport vesicle	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0035023	regulation of Rho protein signal transduction	IEP	Neighborhood
BP	GO:0035024	negative regulation of Rho protein signal transduction	IEP	Neighborhood
BP	GO:0035725	sodium ion transmembrane transport	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
CC	GO:0042995	cell projection	IEP	Neighborhood
BP	GO:0043288	apocarotenoid metabolic process	IEP	Neighborhood
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	Neighborhood
BP	GO:0044703	multi-organism reproductive process	IEP	Neighborhood
CC	GO:0045177	apical part of cell	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0046580	negative regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	Neighborhood
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Neighborhood
BP	GO:0051058	negative regulation of small GTPase mediated signal transduction	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0060284	regulation of cell development	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
CC	GO:0070382	exocytic vesicle	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0080092	regulation of pollen tube growth	IEP	Neighborhood
CC	GO:0090406	pollen tube	IEP	Neighborhood
BP	GO:0098609	cell-cell adhesion	IEP	Neighborhood
BP	GO:0098740	multi organism cell adhesion	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
CC	GO:0099503	secretory vesicle	IEP	Neighborhood
CC	GO:0099568	cytoplasmic region	IEP	Neighborhood
CC	GO:0120025	plasma membrane bounded cell projection	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1902644	tertiary alcohol metabolic process	IEP	Neighborhood
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	101	424

External Links

No external refs found!

AT3G07850

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation