AT3G08030

Description : Protein of unknown function, DUF642

Gene families : OG0000610 (Archaeplastida) Phylogenetic Tree(s): OG0000610_tree ,
OG_05_0009836 (LandPlants) Phylogenetic Tree(s): OG_05_0009836_tree ,
OG_06_0008062 (SeedPlants) Phylogenetic Tree(s): OG_06_0008062_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G08030
Cluster	HCCA: Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00042p00185900	evm_27.TU.AmTr_v1...	No description available	0.02	Archaeplastida
AMTR_s00141p00085330	evm_27.TU.AmTr_v1...	No description available	0.06	Archaeplastida
AMTR_s00141p00087130	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AMTR_s00141p00087190	evm_27.TU.AmTr_v1...	No description available	0.05	Archaeplastida
AMTR_s00141p00103540	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AT1G80240	No alias	Protein of unknown function, DUF642	0.06	Archaeplastida
AT2G41800	No alias	Protein of unknown function, DUF642	0.05	Archaeplastida
GSVIVT01033286001	No alias	No description available	0.07	Archaeplastida
Gb_14930	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os01g55190.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os03g59300.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os07g04050.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10434741g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_251322g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_770477g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc03g120040.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc06g067910.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc12g042930.2.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e007711_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e007713_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006779	porphyrin-containing compound biosynthetic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009740	gibberellic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015995	chlorophyll biosynthetic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051186	cofactor metabolic process	None	Extended
BP	GO:0051188	cofactor biosynthetic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000247	C-8 sterol isomerase activity	IEP	Neighborhood
MF	GO:0005372	water transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006825	copper ion transport	IEP	Neighborhood
BP	GO:0006949	syncytium formation	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
BP	GO:0009828	plant-type cell wall loosening	IEP	Neighborhood
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0009968	negative regulation of signal transduction	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010252	auxin homeostasis	IEP	Neighborhood
BP	GO:0010648	negative regulation of cell communication	IEP	Neighborhood
MF	GO:0015250	water channel activity	IEP	Neighborhood
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016863	intramolecular oxidoreductase activity, transposing C=C bonds	IEP	Neighborhood
BP	GO:0019932	second-messenger-mediated signaling	IEP	Neighborhood
BP	GO:0023057	negative regulation of signaling	IEP	Neighborhood
MF	GO:0030570	pectate lyase activity	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048439	flower morphogenesis	IEP	Neighborhood
BP	GO:0048479	style development	IEP	Neighborhood
BP	GO:0048480	stigma development	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0060147	regulation of posttranscriptional gene silencing	IEP	Neighborhood
BP	GO:0060964	regulation of gene silencing by miRNA	IEP	Neighborhood
BP	GO:0060966	regulation of gene silencing by RNA	IEP	Neighborhood
BP	GO:0060968	regulation of gene silencing	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006946	DUF642	194	361
IPR006946	DUF642	27	183

External Links

No external refs found!

AT3G08030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation