AT1G02170 (ATMC1, LOL3, MCP1B,...)

Aliases : ATMC1, LOL3, MCP1B, MC1, ATMCPB1

Description : metacaspase 1

Gene families : OG0000779 (Archaeplastida) Phylogenetic Tree(s): OG0000779_tree ,
OG_05_0001042 (LandPlants) Phylogenetic Tree(s): OG_05_0001042_tree ,
OG_06_0000767 (SeedPlants) Phylogenetic Tree(s): OG_06_0000767_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G02170
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020556.39	No alias	Metacaspase-3 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cpa\|evm.model.tig00020675.88	No alias	Multi-process regulation.programmed cell death.MCP1...	0.01	Archaeplastida
Solyc01g088710.3.1	No alias	MCP1 programmed cell death metacaspase-like regulator	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004197	cysteine-type endopeptidase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006508	proteolysis	ISS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009696	salicylic acid metabolic process	None	Extended
BP	GO:0009697	salicylic acid biosynthetic process	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0010942	positive regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0016999	antibiotic metabolic process	None	Extended
BP	GO:0017000	antibiotic biosynthetic process	None	Extended
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0018958	phenol-containing compound metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0030968	endoplasmic reticulum unfolded protein response	RCA	Interproscan
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
BP	GO:0042537	benzene-containing compound metabolic process	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043068	positive regulation of programmed cell death	IDA	Interproscan
BP	GO:0043068	positive regulation of programmed cell death	IGI	Interproscan
BP	GO:0043069	negative regulation of programmed cell death	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0045087	innate immune response	RCA	Interproscan
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046189	phenol-containing compound biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	Neighborhood
BP	GO:0000266	mitochondrial fission	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
BP	GO:0001666	response to hypoxia	IEP	Neighborhood
BP	GO:0001763	morphogenesis of a branching structure	IEP	Neighborhood
BP	GO:0002237	response to molecule of bacterial origin	IEP	Neighborhood
BP	GO:0002790	peptide secretion	IEP	Neighborhood
MF	GO:0003954	NADH dehydrogenase activity	IEP	Neighborhood
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
MF	GO:0004168	dolichol kinase activity	IEP	Neighborhood
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	Neighborhood
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0006522	alanine metabolic process	IEP	Neighborhood
BP	GO:0006524	alanine catabolic process	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006862	nucleotide transport	IEP	Neighborhood
BP	GO:0006865	amino acid transport	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006995	cellular response to nitrogen starvation	IEP	Neighborhood
BP	GO:0007005	mitochondrion organization	IEP	Neighborhood
BP	GO:0007154	cell communication	IEP	Neighborhood
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009078	pyruvate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009080	pyruvate family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009266	response to temperature stimulus	IEP	Neighborhood
BP	GO:0009267	cellular response to starvation	IEP	Neighborhood
BP	GO:0009306	protein secretion	IEP	Neighborhood
BP	GO:0009409	response to cold	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
CC	GO:0009528	plastid inner membrane	IEP	Neighborhood
BP	GO:0009581	detection of external stimulus	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009607	response to biotic stimulus	IEP	Neighborhood
BP	GO:0009620	response to fungus	IEP	Neighborhood
BP	GO:0009627	systemic acquired resistance	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009631	cold acclimation	IEP	Neighborhood
BP	GO:0009646	response to absence of light	IEP	Neighborhood
CC	GO:0009706	chloroplast inner membrane	IEP	Neighborhood
BP	GO:0009723	response to ethylene	IEP	Neighborhood
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009814	defense response, incompatible interaction	IEP	Neighborhood
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009991	response to extracellular stimulus	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	Neighborhood
BP	GO:0010311	lateral root formation	IEP	Neighborhood
MF	GO:0015398	high-affinity secondary active ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015695	organic cation transport	IEP	Neighborhood
BP	GO:0015696	ammonium transport	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015748	organophosphate ester transport	IEP	Neighborhood
BP	GO:0015802	basic amino acid transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0015931	nucleobase-containing compound transport	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0019481	L-alanine catabolic process, by transamination	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0023014	signal transduction by protein phosphorylation	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Neighborhood
CC	GO:0031304	intrinsic component of mitochondrial inner membrane	IEP	Neighborhood
BP	GO:0031667	response to nutrient levels	IEP	Neighborhood
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Neighborhood
BP	GO:0031669	cellular response to nutrient levels	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
BP	GO:0034214	protein hexamerization	IEP	Neighborhood
BP	GO:0034599	cellular response to oxidative stress	IEP	Neighborhood
BP	GO:0036293	response to decreased oxygen levels	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042594	response to starvation	IEP	Neighborhood
BP	GO:0042742	defense response to bacterium	IEP	Neighborhood
BP	GO:0042851	L-alanine metabolic process	IEP	Neighborhood
BP	GO:0042853	L-alanine catabolic process	IEP	Neighborhood
BP	GO:0043090	amino acid import	IEP	Neighborhood
BP	GO:0043207	response to external biotic stimulus	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
BP	GO:0043562	cellular response to nitrogen levels	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0050832	defense response to fungus	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0051193	regulation of cofactor metabolic process	IEP	Neighborhood
BP	GO:0051258	protein polymerization	IEP	Neighborhood
BP	GO:0051259	protein complex oligomerization	IEP	Neighborhood
BP	GO:0051704	multi-organism process	IEP	Neighborhood
BP	GO:0051707	response to other organism	IEP	Neighborhood
MF	GO:0070191	methionine-R-sulfoxide reductase activity	IEP	Neighborhood
BP	GO:0070482	response to oxygen levels	IEP	Neighborhood
MF	GO:0070567	cytidylyltransferase activity	IEP	Neighborhood
BP	GO:0071496	cellular response to external stimulus	IEP	Neighborhood
BP	GO:0080181	lateral root branching	IEP	Neighborhood
BP	GO:0098542	defense response to other organism	IEP	Neighborhood
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005735	Znf_LSD1	18	42

External Links

No external refs found!

AT1G02170 (ATMC1, LOL3, MCP1B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation