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  5. Zm00001e002394_P001

Zm00001e002394_P001


Description : Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana (sp|q9skq4|pp167_arath : 314.0)


Gene families : OG0009780 (Archaeplastida) Phylogenetic Tree(s): OG0009780_tree ,
OG_05_0000789 (LandPlants) Phylogenetic Tree(s): OG_05_0000789_tree ,
OG_06_0000692 (SeedPlants) Phylogenetic Tree(s): OG_06_0000692_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002394_P001
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT1G09190 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
Gb_31465 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc01g098480.3.1 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.06 Archaeplastida
Solyc03g006990.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 394 420
IPR002885 Pentatricopeptide_repeat 127 153
IPR002885 Pentatricopeptide_repeat 157 183
IPR002885 Pentatricopeptide_repeat 435 457
IPR002885 Pentatricopeptide_repeat 232 256
IPR002885 Pentatricopeptide_repeat 289 336
No external refs found!