1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e002552_P001

Zm00001e002552_P001


Description : RNA editing factor (SEL1/PDM1)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000030 (LandPlants) Phylogenetic Tree(s): OG_05_0000030_tree ,
OG_06_0010142 (SeedPlants) Phylogenetic Tree(s): OG_06_0010142_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002552_P001
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.02 Archaeplastida
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
AMTR_s00029p00062590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.05 Archaeplastida
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.04 Archaeplastida
AMTR_s00039p00023570 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.05 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00056p00185560 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.03 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.1 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT3G18970 MEF20 mitochondrial editing factor 20 0.06 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.09 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01000086001 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.07 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.07 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.07 Archaeplastida
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
GSVIVT01012201001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
GSVIVT01015233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
GSVIVT01017075001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
GSVIVT01018877001 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.04 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01021246001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.04 Archaeplastida
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.05 Archaeplastida
GSVIVT01022894001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
GSVIVT01026181001 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.04 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 Archaeplastida
GSVIVT01033190001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
GSVIVT01033735001 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.05 Archaeplastida
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
GSVIVT01036207001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.06 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.05 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_08772 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
Gb_15639 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_17092 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_18979 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_20153 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_23023 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Gb_26260 No alias RNA editing factor (MEF7) 0.02 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Gb_32439 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_38249 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
LOC_Os01g25270.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
LOC_Os01g27650.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 Archaeplastida
LOC_Os01g46230.1 No alias RNA editing factor (MEF1) 0.04 Archaeplastida
LOC_Os01g62910.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.07 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.06 Archaeplastida
LOC_Os03g44210.2 No alias RNA editing factor (SEL1/PDM1) 0.1 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.03 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.03 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.05 Archaeplastida
LOC_Os05g50460.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os08g33700.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.08 Archaeplastida
LOC_Os09g07780.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_75133g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_81514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_8893194g0010 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_953793g0020 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Smo100125 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
Smo132312 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.02 Archaeplastida
Smo465 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo74762 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo84657 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Smo90123 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.02 Archaeplastida
Smo98955 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Solyc01g007850.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Solyc01g081020.1.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
Solyc01g095690.2.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.07 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.08 Archaeplastida
Solyc01g098150.3.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.05 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.09 Archaeplastida
Solyc03g025700.2.1 No alias OTP70 plastidial RNA splicing factor 0.04 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.06 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.06 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.09 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.04 Archaeplastida
Solyc07g065730.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.03 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.08 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.08 Archaeplastida
Solyc11g017370.3.1 No alias RNA editing factor (AEF1) 0.03 Archaeplastida
Solyc11g066920.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 Archaeplastida
Solyc11g071370.1.1 No alias RNA editing factor (CLB19) 0.03 Archaeplastida
Solyc12g006575.1.1 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Zm00001e000523_P001 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.03 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Zm00001e036302_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 128 154
IPR002885 Pentatricopeptide_repeat 156 185
IPR002885 Pentatricopeptide_repeat 330 355
IPR002885 Pentatricopeptide_repeat 357 386
IPR002885 Pentatricopeptide_repeat 559 588
IPR002885 Pentatricopeptide_repeat 532 557
IPR002885 Pentatricopeptide_repeat 254 301
IPR002885 Pentatricopeptide_repeat 456 504
No external refs found!