1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e002639_P004

Zm00001e002639_P004


Description : Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana (sp|q2hij8|rhb1a_arath : 97.1)


Gene families : OG0000951 (Archaeplastida) Phylogenetic Tree(s): OG0000951_tree ,
OG_05_0000709 (LandPlants) Phylogenetic Tree(s): OG_05_0000709_tree ,
OG_06_0000552 (SeedPlants) Phylogenetic Tree(s): OG_06_0000552_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002639_P004
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT5G38895 No alias RING/U-box superfamily protein 0.04 Archaeplastida
GSVIVT01001107001 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01027002001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01036545001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
LOC_Os11g18947.1 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 Archaeplastida
LOC_Os11g41140.1 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.02 Archaeplastida
MA_3928558g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp6g04810.1 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.03 Archaeplastida
Solyc02g089240.3.1 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.04 Archaeplastida
Solyc08g081300.4.1 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
BP GO:0006672 ceramide metabolic process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
InterPro domains Description Start Stop
IPR024766 Znf_RING_H2 102 146
No external refs found!