Zm00001e002867_P004


Description : Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana (sp|q9lsq2|pp239_arath : 556.0)


Gene families : OG0011343 (Archaeplastida) Phylogenetic Tree(s): OG0011343_tree ,
OG_05_0011199 (LandPlants) Phylogenetic Tree(s): OG_05_0011199_tree ,
OG_06_0010465 (SeedPlants) Phylogenetic Tree(s): OG_06_0010465_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002867_P004
Cluster HCCA: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00184190 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AT3G16890 PPR40 pentatricopeptide (PPR) domain protein 40 0.04 Archaeplastida
Gb_40070 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os12g37100.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
MA_29431g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 567 612
IPR002885 Pentatricopeptide_repeat 425 471
IPR002885 Pentatricopeptide_repeat 216 262
IPR002885 Pentatricopeptide_repeat 493 542
IPR002885 Pentatricopeptide_repeat 322 350
IPR002885 Pentatricopeptide_repeat 182 211
IPR002885 Pentatricopeptide_repeat 392 421
No external refs found!